Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29050 385 / 1e-132 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 363 / 5e-124 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 307 / 4e-103 ATRBL2 RHOMBOID-like 2 (.1) AT5G07250 267 / 8e-87 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 261 / 2e-85 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 228 / 2e-72 ATRBL5 RHOMBOID-like protein 5 (.1) AT4G23070 219 / 1e-68 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G77860 189 / 2e-56 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003971 [exp] 597 / 0 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10004965 [exp] 359 / 9e-123 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10024497 [exp] 332 / 1e-112 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 328 / 7e-111 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10005464 [exp] 326 / 3e-109 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10027436 [exp] 252 / 1e-80 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10003743 [exp] 206 / 2e-62 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10028036 [exp] 202 / 5e-61 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10023145 [exp] 43 / 0.0003 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086300 [exp] 474 / 1e-167 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.009G031900 [exp] 391 / 5e-135 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 383 / 6e-132 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 332 / 9e-113 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 321 / 2e-108 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 313 / 4e-105 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 291 / 2e-96 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.002G090400 [exp] 203 / 3e-61 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.017G112900 [exp] 43 / 0.0003 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10023789 pacid=23151441 polypeptide=Lus10023789 locus=Lus10023789.g ID=Lus10023789.BGIv1.0 annot-version=v1.0 ATGGACAAAGGCCGCCCTCCTCCTCCACCCCAGTCAGAGATCGAGATGAGGTTCAACTCACGGCAGGGAAACGGCGTCATACACCCGGCGAATTCGGATT CGGCGCCGGCACAACAACAACCTCGAAGCTACATACAAGTAAAGGATCCTAAGAAATGGGTAACCTGGTTGATACCTTGTTTCGTGCTTGCCAATATCAT CATGTTCATAATCACTATGTCCAAGAACAATTGCCCCAAGAACTCTGTCTCTTGCGTTGCTCGCTTCCTTGGTAGGTTCTCGTTTCAGCCCTTTAAGGAG AATCCTCTGCTGGGTCCTTCTTCCAGCACGTTACGGGATATGGGGGCTTTAGATGTAAACAAAGTGGTACACCAACACCAAGGATGGCGTCTTCTCAGTT GCAATTGGTTACATGGAGGGGTTTTCCATTTGCTGGCCAATATGTTGAGTCTTTTGGTTATTGGAATTCGTCTCGAGCAAGAATTCGGATTTGTGAAAAT TGGGTTGCTGTATGTAATCTCTGGATTTGGCGGAAGTTTGTTATCGGCCCTTTTCATTCAATCTAACATCTCTGTGGGTGCTTCTGGTGCTCTATTTGGG TTACTTGGAGCAATGCTTTCTGAACTAATCACTAATTGGTCAATCTATGCAAACAAGGTAGCAGCTTTTATAACTCTCTTGCTCATCGTTGTGATCAACT TAGCCGTGGGAATCCTTCCCCATGTTGACAACTTCGCCCACATTGGAGGATTCCTTTCCGGATTTCTCCTCGGATTCGTGTTTCTGATTCGGCCCCAGTA TGGATGGTTCAATAAAAGATATGCTCCAATTGGACATCCTCCAGGCCCTCCAAAATCAAAATTCAAGAGATATCAGTTGATATTGTGGATCGGAGCTATC ATTCTCATTGTTGCTGGATTGGCCGTGGGGCTTGCTGTGCTTCTCCGGGGAGTTGATGCGAACAAACACTGTTCCTGGTGTCATTATCTGTCTTGTGTCC CTACAGGGAGATGGAGCTGCAGCACTCAACCTGCATACTGCTCGTCGGTACAGTCGGGGAACCAGCTGAACATAACATGCTCGAGCAACGGGAAATCGGG GGTTTACATAGTGCCAAATGCGAGTAATTCTAAAATACAAGGCTTGTGCCAACAGTTCTGTGGTTGA
AA sequence Show only first row Show all	>Lus10023789 pacid=23151441 polypeptide=Lus10023789 locus=Lus10023789.g ID=Lus10023789.BGIv1.0 annot-version=v1.0 MDKGRPPPPPQSEIEMRFNSRQGNGVIHPANSDSAPAQQQPRSYIQVKDPKKWVTWLIPCFVLANIIMFIITMSKNNCPKNSVSCVARFLGRFSFQPFKE NPLLGPSSSTLRDMGALDVNKVVHQHQGWRLLSCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKIGLLYVISGFGGSLLSALFIQSNISVGASGALFG LLGAMLSELITNWSIYANKVAAFITLLLIVVINLAVGILPHVDNFAHIGGFLSGFLLGFVFLIRPQYGWFNKRYAPIGHPPGPPKSKFKRYQLILWIGAI ILIVAGLAVGLAVLLRGVDANKHCSWCHYLSCVPTGRWSCSTQPAYCSSVQSGNQLNITCSSNGKSGVYIVPNASNSKIQGLCQQFCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	0	1
					Lus10021100 [exp]	1.0	0.9152
AT5G38260			Protein kinase superfamily pro...		Lus10025554 [exp]	2.4	0.9012
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	2.8	0.9119
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	3.0	0.8834
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	3.5	0.9122
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	3.9	0.9049
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	4.0	0.9129
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	5.7	0.8729
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	9.1	0.8566
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	9.6	0.8609

Compare expression of checked genes

Lus10023789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.