Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02270 503 / 0 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT5G44110 281 / 4e-94 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G03905 273 / 5e-91 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G41700 61 / 4e-10 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT4G25450 52 / 3e-07 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT1G53270 50 / 1e-06 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT1G02530 50 / 2e-06 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G02520 49 / 5e-06 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G25960 49 / 6e-06 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G28010 48 / 7e-06 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003971 [exp] 614 / 0 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10010838 [exp] 506 / 0 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10024914 [exp] 271 / 7e-90 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022909 [exp] 271 / 1e-89 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029905 [exp] 62 / 3e-10 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10032911 [exp] 59 / 3e-09 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10004496 [exp] 57 / 1e-08 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10024162 [exp] 54 / 1e-07 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10011498 [exp] 53 / 2e-07 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086000 [exp] 513 / 0 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.003G155800 [exp] 506 / 0 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.005G226600 [exp] 280 / 3e-93 AT1G03905 435 / 3e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G036300 [exp] 280 / 3e-93 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G073100 [exp] 56 / 2e-08 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 56 / 2e-08 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.016G093600 [exp] 50 / 2e-06 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G049300 [exp] 49 / 3e-06 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.001G393300 [exp] 48 / 5e-06 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.015G063500 [exp] 48 / 7e-06 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023792 pacid=23151446 polypeptide=Lus10023792 locus=Lus10023792.g ID=Lus10023792.BGIv1.0 annot-version=v1.0 ATGGCGATCATGGATCAGTCCCCACGACAGCCAACGATCGAAATCAATGGCCTCAGGTTCACATATCCAGGAATCGACGGCCACCCTCCGCCTGGTTCCA AACCCCTCATCGAAGATCTGTCGCTCACTCTCAATGCCGGCGACCGATGCCTCCTCGTCGGATCCAATGGCGCAGGGAAGACGACGATACTGAAAATAAT GGGAGGGAAGCATATGGTGGAGTCTCACATGGTTCGGGTGTTGGGTAGGTCTGCTTTCCACGACACTGCCTTGTCTGCTTCCGGCGATCTTTCCTATCTC GGAGGAGAGTGGCGGAGGGATGTTGCTTTTGCTGGGTTTGAGGTCCCAATTCAAATGGATATTTCTGCAGAGAAGATGTTGTTTGGTGTGGCTGGGATCG ACACTCAGAGAAGAGATGAACTGATCAAGGTATTGGACATTGATCTGTCATGGAGAATGCACAAAGTTTCTGATGGTCAGAGGAGAAGAGTGCAGATCTG TATGGGCCTCCTGAGACCATTCAAGGTTCTTTTACTGGATGAGATAACAGTTGATCTGGATGTGCTAGCCCGGGCGGATCTTCTGACATTCCTAAGGAAG GAATGCGAAGAAAGAGGTGCCACTATCATCTATGCCACTCACATATTTGATGGGTTAGAGGAGTGGCCTACACATATGGTGTACGTAGCTGGTGGGAAGT TGCAATTAGCAATGCCAATGTCAAAAATCAAGCAGATTAGTGATCTGTCTCTGATGAGAACAGTTGAAGGTTGGTTGAGGAAAGAGAGGGACGAGGAGAG GAAGAGGAGGAAAGAGAGGAAAGCTAAAGGACTGCCGGAGTTTGAAAACCAGCAGGTTGAGGGAAGTCGGGTAGTTGGTGGAGATCCAGCTCGTTCTGCA GCAGTTAAAATGACAAACAATGGATGGGCAGCTGGGAGGCTGCATTCCACTATTGCAGGGGAAGACAACTTCAACCTCAGCTCCAATAGAGTTATGAGGC AGTGA
AA sequence Show only first row Show all	>Lus10023792 pacid=23151446 polypeptide=Lus10023792 locus=Lus10023792.g ID=Lus10023792.BGIv1.0 annot-version=v1.0 MAIMDQSPRQPTIEINGLRFTYPGIDGHPPPGSKPLIEDLSLTLNAGDRCLLVGSNGAGKTTILKIMGGKHMVESHMVRVLGRSAFHDTALSASGDLSYL GGEWRRDVAFAGFEVPIQMDISAEKMLFGVAGIDTQRRDELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEITVDLDVLARADLLTFLRK ECEERGATIIYATHIFDGLEEWPTHMVYVAGGKLQLAMPMSKIKQISDLSLMRTVEGWLRKERDEERKRRKERKAKGLPEFENQQVEGSRVVGGDPARSA AVKMTNNGWAAGRLHSTIAGEDNFNLSSNRVMRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10023792 [exp]	0	1
AT2G25530			AFG1-like ATPase family protei...		Lus10002025 [exp]	1.4	0.8576
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	4.0	0.8589
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	4.0	0.8262
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10036227 [exp]	6.0	0.8337
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10035281 [exp]	10.9	0.8018
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10013002 [exp]	14.5	0.8283
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	15.1	0.8311
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	15.7	0.8316
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	17.9	0.7680
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	18.1	0.8420

Compare expression of checked genes

Lus10023792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.