Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02280 261 / 1e-91 SNARE-like superfamily protein (.1) AT1G51160 64 / 1e-13 SNARE-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024390 [exp] 269 / 1e-94 AT5G02280 263 / 4e-92 SNARE-like superfamily protein (.1) Lus10010836 [exp] 265 / 4e-93 AT5G02280 259 / 2e-90 SNARE-like superfamily protein (.1) Lus10039298 [exp] 70 / 9e-16 AT1G51160 323 / 5e-115 SNARE-like superfamily protein (.1.2) Lus10027541 [exp] 70 / 9e-16 AT1G51160 323 / 5e-115 SNARE-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069800 [exp] 274 / 1e-96 AT5G02280 267 / 1e-93 SNARE-like superfamily protein (.1) Potri.017G149900 [exp] 67 / 1e-14 AT1G51160 332 / 2e-118 SNARE-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF04099 [flax] [poplar] Sybindin Sybindin-like family
Representative CDS sequence Show only first row Show all	>Lus10023793 pacid=23151423 polypeptide=Lus10023793 locus=Lus10023793.g ID=Lus10023793.BGIv1.0 annot-version=v1.0 ATGGCGGCGATATACAGTCTCTACATCATCAACAAATCCGGCGGCTTGATCTTCTACAAGGATTACGGGTCGGCCGGAAGAATGGACACGAATGATAGCT TGCGAGTAGCCAGTTTGTGGCATTCGATGCACGCTATCTCTCAGCAGCTCTCCCCGGTTGTTGGCTGCTCAGGCATTGAGCTCCTCGGAGCCGATACTTT TGACCTACATTGCTTCCAGTCCCTTACAGGGACCAAGTTCTTTGTGGTGTGTGAGCCTGGAACGCAGCATATGGAGAATCTGTTGAAATACATCTATGAG CTGTATACAGATTATGTTCTGAAGAACCCTTTCTATGAGATGGAGATGCCCATTAGATGCGAGCTCTTCGACCTCAATCTGTCTCAGGCTATACACAAGG ATCGTGTTCCATTCTGGGGTCGATGA
AA sequence Show only first row Show all	>Lus10023793 pacid=23151423 polypeptide=Lus10023793 locus=Lus10023793.g ID=Lus10023793.BGIv1.0 annot-version=v1.0 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVVGCSGIELLGADTFDLHCFQSLTGTKFFVVCEPGTQHMENLLKYIYE LYTDYVLKNPFYEMEMPIRCELFDLNLSQAIHKDRVPFWGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02280			SNARE-like superfamily protein...		Lus10023793 [exp]	0	1
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10041381 [exp]	3.0	0.6585
AT1G64870			unknown protein		Lus10002022 [exp]	5.2	0.6842
AT1G17930			Aminotransferase-like, plant m...		Lus10033415 [exp]	8.4	0.6650
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10015498 [exp]	10.2	0.6212
					Lus10017767 [exp]	21.6	0.6246
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	27.0	0.6303
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	30.1	0.6284
AT5G46795		MSP2	microspore-specific promoter ...		Lus10000907 [exp]	40.4	0.5323
					Lus10021782 [exp]	43.0	0.6055
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042202 [exp]	45.6	0.6055

Compare expression of checked genes

Lus10023793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.