Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02290 543 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G28930 536 / 0 APK1B protein kinase 1B (.1.2.3) AT1G07570 533 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT2G39660 491 / 1e-174 BIK1 botrytis-induced kinase1 (.1) AT2G02800 469 / 9e-166 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 462 / 2e-163 PBL1 PBS1-like 1 (.1.2) AT5G15080 457 / 5e-160 Protein kinase superfamily protein (.1) AT1G26970 452 / 5e-159 Protein kinase superfamily protein (.1) AT1G14370 451 / 2e-158 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G01300 452 / 4e-158 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024391 [exp] 658 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 655 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003972 [exp] 621 / 0 AT5G02290 448 / 5e-158 Protein kinase superfamily protein (.1.2) Lus10040806 [exp] 548 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10016537 [exp] 547 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10002697 [exp] 538 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 536 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004964 [exp] 527 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 520 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094300 [exp] 601 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G240400 [exp] 570 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 565 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.010G203400 [exp] 553 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 549 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 483 / 3e-171 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 477 / 1e-168 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.008G194700 [exp] 453 / 2e-158 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 451 / 7e-158 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 448 / 3e-157 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023794 pacid=23151437 polypeptide=Lus10023794 locus=Lus10023794.g ID=Lus10023794.BGIv1.0 annot-version=v1.0 ATGGGACTTTGCTTGAGCAATCGAATCAAAGCATATAGTCCTTCAAACACAGGATTGAATTCAAGGGGGGATGGAAGGAGTCTGAGCAATTCGGGATCTC TACCTAACACTCCCAGGAGTGAAGGAGAGATTCTTCAGTCTTCCAACTTGAAAGTCTTCACCTTTGCCGAGCTCAAAAACTCCACCAGGAATTTCAGGCC CGATAGCGTGCTTGGAGAAGGTGGATTTGGATCAGTCTTCAAAGGCTGGATCGATGAGGATTCGCTTACGCCTACCAAGCCTGGAACTGGCGTTATCATT GCTGTTAAAAGACTCAATCAAGAAAGCTTCCAGGGTCACAAGGAATGGCTGGCAGAAATAAATTATCTGGGGCAGTTGCATCATCCAAACCTGGTCAAAC TGCTGGGCTACTGTTTGGAAGATGATCATCGTCTTCTGGTTTATGAATTCCTGTCCAGGGGAAGTTTGGAGAATCATTTATTCAGGAGAGGTTCTCATGT TCATCCACTTTCCTGGAGAATTAGAATGAAGGTGGCCTTGGGTGCTGCAAGAGGGCTTGCCTTTCTTCACGGCGATGAAGTCCAAGTTATATATCGCGAT TTCAAGGCTTCCAACATTCTTCTCGACACTAACTACAATGCAAAGCTATCTGATTTCGGATTAGCTAGGGACGGTCCAACTGGCGATAAAAGCCATGTTT CCACAAGGGTTATGGGAACATATGGATATGCAGCACCAGAATATCTAGCCACGGGTCATTTGACAGCAAAGAGTGATGTTTACAGTTTTGGAGTTGTACT TCTGGAAGTGCTGTCTGGCCGCAAAGCCATAGACAAAAACAGGCCTTCTGGGCAACACAATCTGATCGAATGGGCAAGACCATACCTGATAAACAAACGA AGAGTCCTCCGTGTCATGGATGCTCGTCTAGAAGGACAGTATTCCCTCCATCGAGCTCAGAAAATCGCCAACCTTGCTCTTCAGTGTTTAGCCTCGGAAC CAAAGTTCAGACCAAACATGGACGAGGTGGTGACAATCCTGGAACAGGTGCAAGAATGTAAGAAACTAACAAACGTGGCATAG
AA sequence Show only first row Show all	>Lus10023794 pacid=23151437 polypeptide=Lus10023794 locus=Lus10023794.g ID=Lus10023794.BGIv1.0 annot-version=v1.0 MGLCLSNRIKAYSPSNTGLNSRGDGRSLSNSGSLPNTPRSEGEILQSSNLKVFTFAELKNSTRNFRPDSVLGEGGFGSVFKGWIDEDSLTPTKPGTGVII AVKRLNQESFQGHKEWLAEINYLGQLHHPNLVKLLGYCLEDDHRLLVYEFLSRGSLENHLFRRGSHVHPLSWRIRMKVALGAARGLAFLHGDEVQVIYRD FKASNILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEVLSGRKAIDKNRPSGQHNLIEWARPYLINKR RVLRVMDARLEGQYSLHRAQKIANLALQCLASEPKFRPNMDEVVTILEQVQECKKLTNVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	0	1
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	1.0	0.9562
AT2G46080			unknown protein		Lus10005122 [exp]	1.4	0.9470
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	1.7	0.9062
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	3.5	0.8859
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	4.9	0.8937
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	5.0	0.8910
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10001810 [exp]	5.5	0.8551
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	9.2	0.8781
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	9.2	0.8572
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	10.5	0.8375

Compare expression of checked genes

Lus10023794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.