Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02410 565 / 0 ALG10 homolog of yeast ALG10, DIE2/ALG10 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003973 [exp] 953 / 0 AT5G02410 599 / 0.0 homolog of yeast ALG10, DIE2/ALG10 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084800 [exp] 659 / 0 AT5G02410 558 / 0.0 homolog of yeast ALG10, DIE2/ALG10 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF04922 [flax] [poplar] DIE2_ALG10 DIE2/ALG10 family
Representative CDS sequence Show only first row Show all	>Lus10023796 pacid=23151439 polypeptide=Lus10023796 locus=Lus10023796.g ID=Lus10023796.BGIv1.0 annot-version=v1.0 ATGGGGAAATTTGTAGTCGCATTGATAGTCAGCTCATGGGCGATTCCGATTTCAATAATCGTTAATCGGATTGTCCCCGATCCTTACATGGATGAGATAT TCCATATACCTCAGGCTCAACACTATTGCAAGGCCAATTTCCGGAGTTGGGATCCCATGATCACTACTCCCCCCGGCTTGTACAGTCTCTCACTTGCACA TGTTGCTTCTTTGTTTCCAGCCGTGTATGCTGTGCGAGGTTCATCGTCACGCTTCTTTGAGCTGTGCTCTACCTCAATACTACGCTCCACAAACATCGCG TTGGCTGTTTTGTGCAGTGTTCTTATGTACGACATTCTTACCTGCGTCAGACCAAATCTTGGAGAAAGGAAAGCAACGTTTCTGTCTATTGTCCTGGCGT TGTACCCTCTGCATTGGTTCTTCACTTTCCTTTACTATACAGATGTTGCATCACTTACTGTGGTGTTTGCAATGTACCTCTTGTGCTTGAAGAAGAGACA CTTCTTCAGTGCACTGATGGGGGCATTTGCTGTTTTCATTCGACAGACGAATGTTGTGTGGGTAATTTTTGTTGCGTGCACGGGAGTAATAGACATTGCT TCACCTCATCTGAAGGAGGAAAGTGAGAAGGTAGACTTGAGGGTCGTTGGGGACGAGAGACTGAGGGCAGTTTCCAACTATCATGTTGCTGCACTTGGAA ACCTGAGACGAAGAAAACCCAATATGGAGAACAACAGCAGCCGCCCGGTGTTTGTTAGAAACTCCTCTAACAGCAAGCCAGTGCTTGTTAGAAGCCCCTC TTTAATAATTAATTCCAGAGGTTTACTCGATGAAATTCGAGTAATCTGCTTGAAATCATGGCAAATGAAGTGGAGGCTTTTATTGTCCTTCAGCCCCTTC TTTATGGTATTGGCGGCCTTTGTTGCTTTTGTCCGTTGGAATGGCAGCGTGGTTCTTGGTGCAAAAGAAGCTCACGCTGTGTCTCCACATTTTGCACAAC TAATGTACTTTAGTCTAGTTTCTGCTCTCGCTGCAACACCGCTTCATTTCTCACCAAGTCATATGGCAGGTCTGTTCCGGTGGTCCTGGAAGAAAGGATC CCTTTTTATTTGTCAATGGCTAGTTGCTTCAATAGCCGGGTTTTTCTCTGTCCACTCTTTCAGCATAGCTCATCCATATCTTCTCGCTGACAATCGACAT TACACCTTCTACCTGTGGAGGAAGATTGTCAATGCTCACGAGTTGGGGAAGTACACTCTGATCCCACTCTATGTATATTCCTGGTTTTCTATCTTCCGCA CAATAGGGAAAGTTAGACCGAGAGTATGGGTGCTGGCATATTTCTTGGCGACAGCTGCTGTACTGGTTCCTGCTCCTTTGATCGAGTTCCGATACTACAC CATACCTTTCTTTTTCCTGATGCTACACTCCTCCATCAGTTATAGAAGTTTGATGCTGATGGGTCTTGGTTATTCTGCAATCAACGCTTTCACAATGATG ATGTTCTTATGCCGTCCCTTCTACTGGAGCCATGAACCTGGCATCCAGCGGTTTATTTGGTAG
AA sequence Show only first row Show all	>Lus10023796 pacid=23151439 polypeptide=Lus10023796 locus=Lus10023796.g ID=Lus10023796.BGIv1.0 annot-version=v1.0 MGKFVVALIVSSWAIPISIIVNRIVPDPYMDEIFHIPQAQHYCKANFRSWDPMITTPPGLYSLSLAHVASLFPAVYAVRGSSSRFFELCSTSILRSTNIA LAVLCSVLMYDILTCVRPNLGERKATFLSIVLALYPLHWFFTFLYYTDVASLTVVFAMYLLCLKKRHFFSALMGAFAVFIRQTNVVWVIFVACTGVIDIA SPHLKEESEKVDLRVVGDERLRAVSNYHVAALGNLRRRKPNMENNSSRPVFVRNSSNSKPVLVRSPSLIINSRGLLDEIRVICLKSWQMKWRLLLSFSPF FMVLAAFVAFVRWNGSVVLGAKEAHAVSPHFAQLMYFSLVSALAATPLHFSPSHMAGLFRWSWKKGSLFICQWLVASIAGFFSVHSFSIAHPYLLADNRH YTFYLWRKIVNAHELGKYTLIPLYVYSWFSIFRTIGKVRPRVWVLAYFLATAAVLVPAPLIEFRYYTIPFFFLMLHSSISYRSLMLMGLGYSAINAFTMM MFLCRPFYWSHEPGIQRFIW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	0	1
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	2.4	0.8416
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	3.3	0.8549
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10036160 [exp]	5.7	0.7753
AT2G28780			unknown protein		Lus10040846 [exp]	6.6	0.8170
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10004095 [exp]	7.1	0.7957
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	8.1	0.8309
AT2G21630			Sec23/Sec24 protein transport ...		Lus10019516 [exp]	8.8	0.7842
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009042 [exp]	9.2	0.8352
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	11.1	0.8413
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	11.8	0.8083

Compare expression of checked genes

Lus10023796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.