Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37670 368 / 5e-114 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 358 / 4e-110 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 165 / 5e-42 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 152 / 8e-38 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 92 / 7e-19 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 76 / 9e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 74 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 74 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 60 / 6e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 47 / 3e-05 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003974 [exp] 809 / 0 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 610 / 0 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027671 [exp] 160 / 1e-40 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 159 / 4e-40 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 101 / 7e-22 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 101 / 8e-22 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 100 / 2e-21 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 97 / 2e-20 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10007783 [exp] 96 / 2e-20 AT5G24320 246 / 3e-73 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084600 [exp] 489 / 1e-159 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G122500 [exp] 160 / 2e-40 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 157 / 2e-39 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 105 / 3e-23 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G144400 [exp] 101 / 7e-22 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 92 / 7e-19 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 87 / 2e-17 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 81 / 2e-15 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G057600 [exp] 79 / 8e-15 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 77 / 2e-14 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023797 pacid=23151461 polypeptide=Lus10023797 locus=Lus10023797.g ID=Lus10023797.BGIv1.0 annot-version=v1.0 ATGGCGACTTCTGCAGCTCCTCCCAAGATGGACCGGAAGCGAACCCTTACCATGAATTGGGACGCCCTCGGCGACCACGACGATGACGACGACGACCGAT TCTTTGACTGCAACCGTCTCTCCACCCCCGTCCCATCCGACCTACCTTCCTCCGGCTCCGACGATGACGAAGAATTCGAAGAATCCCGCCCTTCCTTCTC CACCTCCCTTTCCTCCAACGACTTCCGAAACTACTCCTTCGCTGCTGCCGCCGCAGCAATGTCGCCACAATACGATATCTGGATGGCAGCCCCCGGATCG ATTACCGAGCGCCGGAAACGTCTGCTCCAAGGAATGGGACTCGCCGAGGAGAAGGCCATTGTTAAGATGATGAGCAGGGAATTCTCCCGCGCAGTCACCC GGAAGATCGCTCAGGTCTCCGCTGCCGCCGCGGCCAAGGCTGCAGCCGCTACATCCTCGGCGTCTCTGCCGTCCGCGTCAAACGGCGATCGTCAGCCGGA CGCCGCTCCTCCCACCGAATCTGAAAAGTCCGAATCTCCGAAGGCGGCAGCCGTGGAGTCCAAACACGAAAAGACGCCTTCGTCGTCGCTTCTGCCGGTG ATGCTCGTACGATCGAGATCAGACGGCGACATTGAATCGATGACAAATGACAAGAAGAGGAAAGAAGAGGTGCTTGGATTGGTCTCCAAGCAACGAATCA CGCGAACCACATCCCTAATTATTGTATCACACGCTAGGATTTACAACTATTCCAGCTATCCAGAATCGGTACGAATCGCCAATCCAGAAGACGGAAACGG ACAATCGGCTGCAGGAGGTGGCAACGGCGGAGGCGGTCACAAACAAGGCACTAAGTCGATTGTGCCGACCAATGGCCTAGGTGCCTTCTTCCTTATCAAG AATTTGGACACGGGTAAAGAATTTGTAGTTAACGAGTACGATCAAAACGGAAGCTGGAACAGAGTTAGCGATCTTCAAACAGGGAAGCAACTGACCATGG AGGAATTCGAGAAAACCGTCGGGCATTCACCGGTTGTTAAGGAGCTAATGAGGAGAGAAGACGTTGCGAACGAGAGAAAGCTAGGAGCTAACAATTACTT CTCCAAGAGCTTGAGGATGAGCAAAAGGAGAGGAGCTGCGTTGGTGAAAAGCATAAAGGGGGTGGCTCATTCAATGTCGATGAGCAATTCGAAGACCGAG AGGGATAGAGATCTTCTTCCGCCAATTCCTGATCAGAAAGGAGGAGGCAGCAAGAATTCAGCTCCTTCAGGGTGGATTAAGGTTCGGCTAACAGGGAAAT CACATAAGGAGCTGAGTGCTTTGCATCTGTGCCAGGAAATTGAGGCTCACGAGGGTTCAATTTGGACGCTTAAGTTTAGCTCTGATGCACGGTATTTAGC TAGCGGCGGTGAAGATAAAGTTATACATATATGGGAAGTTCAGGAATGTGAAGTGCTGTCGTTGCATGATGGCCATTTGACTCCTCTTCATCCATCTTTG CCTAACTCGGTGGCGCCTACTCTAGTCGAGGCTGCATCAACGCCATCCTTGAAGAAGAAGAAGAAGAAAGGTTCAGCTAGCAAGAAATCGAATCCCATTC CAGAATATGTTCATTTTTCTCCAGGAAACCCATCTGAAGTCCTCATCACTTCCGCTGATTCCGGAATACGTATATTGGATGGCAAAGATGAAGTCCACAA ATTCAGAGGTTTCAAAAACGTAAACAGCCAAATCACAGCTTCGTTCACCTTAAGCGGGAAGCATGTGGTGTGCGCGAGTGAAGACTCCAACATATATGTA TGGAAGCGAGAAGAGGGTCGTCCTGGAAAGGGAAAGAGCGTGATCACAAGTCGAGGGTTCGAGGCATTCCAATGCAAAGATGTGTCGGTGGCCATCCCAT TTCCCGGAACAGTGAAAGGTGACCCTCCACCGATGCCAAGCAGCATCAGCAGCACGACGAAAAGCAAGTCGAAACGCCAATCTTCTTCTCCAACAAAAGA AGACTCCTCAACTTCCAGCAAAAGGAGCCAGCCGGGAGCTGTGGTTGGAGAGGAAGAGACTACTTCAGCAGCTAAAAAGCCTCCGCTTCCGAAGAAGCAT CACAAAGAGAACAATAATAATAACAGCAAGGACGATAAAGAGAGCAGTAATAATACTAGTATTGCTAAAGAAGAAGATAACAACAAGGATGACAAAGATA GTAGTGGCGCTGAAGAGAAAAGCTCAGCTGTGCCTCCAGAAGAAGAGCCGTCGTCAACTTCTGGGAATGGGGAGTCATTATCTTCTTCTGCGAAATTGGA TGAACATCCTCCATCTTCGTCAGCTTCGAGTTGGTCTTTGTTTGAAGGGAGCAACCATGGGAGCAACAGTAATAATCAAGCCTCGGCGTGGGGGCTTGTG ATCGTGGCAGCCACATCTGGAGGTGAGATTAAAGCTTACCAGAATTTTGGTATGCCTCGTAGGATGGGTCGGCAGAGCAATCTGTTCTAG
AA sequence Show only first row Show all	>Lus10023797 pacid=23151461 polypeptide=Lus10023797 locus=Lus10023797.g ID=Lus10023797.BGIv1.0 annot-version=v1.0 MATSAAPPKMDRKRTLTMNWDALGDHDDDDDDRFFDCNRLSTPVPSDLPSSGSDDDEEFEESRPSFSTSLSSNDFRNYSFAAAAAAMSPQYDIWMAAPGS ITERRKRLLQGMGLAEEKAIVKMMSREFSRAVTRKIAQVSAAAAAKAAAATSSASLPSASNGDRQPDAAPPTESEKSESPKAAAVESKHEKTPSSSLLPV MLVRSRSDGDIESMTNDKKRKEEVLGLVSKQRITRTTSLIIVSHARIYNYSSYPESVRIANPEDGNGQSAAGGGNGGGGHKQGTKSIVPTNGLGAFFLIK NLDTGKEFVVNEYDQNGSWNRVSDLQTGKQLTMEEFEKTVGHSPVVKELMRREDVANERKLGANNYFSKSLRMSKRRGAALVKSIKGVAHSMSMSNSKTE RDRDLLPPIPDQKGGGSKNSAPSGWIKVRLTGKSHKELSALHLCQEIEAHEGSIWTLKFSSDARYLASGGEDKVIHIWEVQECEVLSLHDGHLTPLHPSL PNSVAPTLVEAASTPSLKKKKKKGSASKKSNPIPEYVHFSPGNPSEVLITSADSGIRILDGKDEVHKFRGFKNVNSQITASFTLSGKHVVCASEDSNIYV WKREEGRPGKGKSVITSRGFEAFQCKDVSVAIPFPGTVKGDPPPMPSSISSTTKSKSKRQSSSPTKEDSSTSSKRSQPGAVVGEEETTSAAKKPPLPKKH HKENNNNNSKDDKESSNNTSIAKEEDNNKDDKDSSGAEEKSSAVPPEEEPSSTSGNGESLSSSAKLDEHPPSSSASSWSLFEGSNHGSNSNNQASAWGLV IVAATSGGEIKAYQNFGMPRRMGRQSNLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02430			Transducin/WD40 repeat-like su...		Lus10023797 [exp]	0	1
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10020372 [exp]	21.0	0.7310
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	32.7	0.7273
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	48.2	0.6583
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	50.9	0.6146
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10035096 [exp]	55.3	0.6490
AT5G01990			Auxin efflux carrier family pr...		Lus10003240 [exp]	59.0	0.6799
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	97.4	0.6401
					Lus10020868 [exp]	99.9	0.6415
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	172.8	0.6399
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10033945 [exp]	193.9	0.6359

Compare expression of checked genes

Lus10023797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.