Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47980 360 / 1e-107 SCC3, ATSCC3 sister-chromatid cohesion protein 3 (.1) AT3G51800 279 / 7e-85 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) AT2G44180 63 / 6e-10 MAP2A methionine aminopeptidase 2A (.1) AT3G59990 57 / 6e-08 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT3G25740 49 / 1e-05 MAP1C, MAP1B methionine aminopeptidase 1C (.1) AT4G37040 46 / 0.0001 MAP1D methionine aminopeptidase 1D (.1) AT1G13270 46 / 0.0001 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015341 [exp] 485 / 8e-154 AT2G47980 1347 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10008306 [exp] 441 / 2e-137 AT2G47980 1261 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10027818 [exp] 317 / 1e-98 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 314 / 9e-98 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 281 / 3e-85 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10003379 [exp] 279 / 1e-80 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005292 [exp] 56 / 5e-08 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10000403 [exp] 53 / 8e-07 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10019308 [exp] 50 / 1e-05 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230800 [exp] 358 / 2e-106 AT2G47980 1292 / 0.0 sister-chromatid cohesion protein 3 (.1) Potri.006G102200 [exp] 291 / 3e-89 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 288 / 1e-87 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.014G151400 [exp] 254 / 5e-71 AT2G47980 957 / 0.0 sister-chromatid cohesion protein 3 (.1) Potri.004G084800 [exp] 54 / 3e-07 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.017G133200 [exp] 54 / 4e-07 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.005G137400 [exp] 48 / 2e-05 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08514 [flax] [poplar] STAG STAG domain PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10023798 pacid=23151479 polypeptide=Lus10023798 locus=Lus10023798.g ID=Lus10023798.BGIv1.0 annot-version=v1.0 ATGTCAGACGAAGAGAGGGAGGTGAAGGAGTTGAATCTCACTTCTCCTGAAGTTGTCACCAAATACAAAGAAGCTGCTGAGATCGTCAATAATGCCTTGC AGTTGGTCGTGAATGAATGCAAACCAAAGGCGAAAATCGTTTACCTATGTCAGAAAGGAGATTCTTACATAATAGAGTACGCAACTGGTAACATGTACAA GCACGCAAAGAAGGGAGTGGCATTCCCTACTTGCGTCTCTGTCAACAATACAGTTGGTCATTTGTCTCCGCTTGCCAATGACGGGAGAGTCTTGGAAGAG GGTAACATTGTTAAGATTGATATAGGTTGTCATATAGATGGATTCATTGCTTTGGTCGCACATACTCATGTCGTTGGTGATGGAGCGGTTACTGGTAGAG CTGCTGATGTGATTGCAGCTTCCAATACCGCTGCTGAAGTTGCTTTGAGGCTTGTGAGGCCTGGGAAAAAGAACAAAGAGGTCACAGATGCAATTCAAAA GGTTGCCGCAGCTTATGACTGCAAAATCGTGGAAGGTGTTCTCAGTCACCAGCTGAAGCAGTTTGTGATAGATGGGAATGAAGTTGATTTTGAATTTGAG GAGAATGAAGTTTATGCAGTAGATATTATGAATCGGAGTCATACCGCGGCTGCTGAGGGAGCAACTGCGAAGATGAATCGGAATCATACCGCGGCTGCTG AGGGAGCAACTGGCACCGGAGGTGAATATCAGGAAACGTCTGCTGGTGCTTCTGACGATGGACCTTCCCATGATGATTTCCAAAAACTTCGGAAACTTCG GAATTCTACTAACGAGGGAAGATCAGCTGCTCATCCCGAGTCGTATACCTTGACTGAGGCCGTCAAGGGAGGTAAGGAAGAGTTGATTCGTCAAGTGGCA AGGTCTTGGCTGAAACGTTATCAGAAGGATCGAACACCTGCAATGGCTGAACTATTAACTTTTGTGTTTCAGGCATGTGGAGCTCGGAATCAAATTGAAA ACGATATGGTCAGCCGGCAAGATATTGATGAAGTCGTAGGTGGTTGCCTTCCAATTCGCGAAAAGGGTGAAATTGAACATTGGAAACTTCTGCTTGTCTG GCACATCCTGGTCATTGAGAGCAAATTTGGACCATTACTTGACGGGTATTTGTTTGACAAAGCTATCAAGTTCATTATTTCTCTATCAGGGTTTGTTGCC GGTCATGTCGCTACCATGATGGGTCTTCAACTCATTAATGAATTAATCGGCATCGCTAACTCGCTTCGTTCGAAGATAAAAGGTAATGAAGCAATGCGAA ATGCTGCAAAGAAACATGGCACCGTGGTTACTAGACTTGAAGAATTTAATGAAGCGAACCCAACAAGTCGTCCTGACGTACTCAAGCTAGAGGAACTGAT GTCAACAGTCTTTGAACGGTTATTCTGCCATCGTCATCGAGACGTTGAACAGAAGATTCAAAGCAAGGGCATCAAGTATCTCGGTGGGTGGATCAAATCC TATCAATCACTGTTTTTGGAAAATTCAAAAACAAAGTTCCTGGGGTGGGCACTGAATGATGAAAGTGCGCGGGTGAGAAATAAATCACTTCGTGCTTTGG AAAGCCTTTATAACGTAGCTGTTGTGCCACCAGGGCTTATCGTTTTTTCTGGAATTTATTACAACCGAATTGTTCGCCTTGTTGGTCTTCGCCTTTTTCC TTGCCGCGTGCAGCTTGGACTTCAGAGGGGGCATCGGGACCTTCTTCTCGGACTTCAACTCATAAACCTCCATGAGCAGCTGCGCTTCCAGCATCTTAGA CTGAGCAATCTCCATGGCCTGCTGCGCTTTCAGACTCTTAGCCTGAGCTCTGTGCTTTGTCAACATAACCTGGATCCAGCACTCAGTGTTTATGTAATCG ATGCTTTGTGGGAGTTCATGGGAGCAACGAAGGATTGGGACAGCATGGTATCCTTGTTCTGGGACTTGAATTATGCGCGATTCCTTACTGATGATGATAC AACAAACTTGGGCAGAATTCTTTTTGCTTCTATCAGAAAAGCTGTTGGAGAGAGAATTGTTCCGTCATCAGACAACCCAGAACAAGATGACAACAGTGCG CAAAGAGAACTCTATGAAAGTAGAAGGGAGGCCATAACAAAAGCAATGGTGGGAAATTACCTACGTCTGGTCGCTAAAGTTTGGAATGAGAAATTGAAGA TGCCGTCAGTGGTCGAGATAATTTTCTATTTTGATTGGGAATGTTTTTCAAAGGACGAGACCTTGGACGAGTATATCCCATTTTTCAGCGAGGCATTTTT TGAAAAGGAGGAGCAGGAGGCCTTGAGATCTTGTTTGAGAACACTTAATTTTTTCCTGAGCAAAGGAGGAGAGCTGAAAGGTTTAGCCGAGGAATATCTG AATTCTATCGAGATACAGCTTGTTGAGAATCTAAAAAGTGATATGAAAAAGGGCGATACTGGAAATGTTCATCTTGTCAGTTTGAAAAGGTTATATGAGC TTCAATTGTCGAAGTCTGTACCACTCGAGGGTTTATTTGAAGATTTTGCCATCTTTCTCGGAAAGGCAGACAAGGAGGTTTGCATCATCATTGCAGAGGC ATGGTGTAAATTCCGACCGGGTAATTTTCAATCAAGCGAACTGGAAAGTTTGGGTTATAGCCCAGAGGAGTCTGATATCCTCAAGTTCTTGAAGCTTTGC GAGAAGGTTGCAGATGTGTTGAAAGATGAACGTGTGAAGAACGATGTAGAGGCGGTTATGATTGCTGCTGCAAACTTCGCTGAGACCACTCATAGCGTGC ATCAAGTTATGTTGACAAAGCACAAAGCTCAGGCTAAGAGTCTGAAAGCACAGCAGGCCATGGAGATTGCTCAGTCTAAGATGCTGGAAGCGCAGCTGCT CATGGAGGTTTATGAGTTGAAGTCCGAGAAGAAGGTCCTGATGCCCCCTCTGAAGTCCAAGCTGCACGCTCTTAAGAAAAAGCTCTACGGTATTAAGGTC AGGAGGCTGCACAGAAGGTCAGGCAGCTCGCCGACAGCAATACAAAAACCGGCAAGGAAAAAGGCGAAGACCAACAATGTAGACCATTAA
AA sequence Show only first row Show all	>Lus10023798 pacid=23151479 polypeptide=Lus10023798 locus=Lus10023798.g ID=Lus10023798.BGIv1.0 annot-version=v1.0 MSDEEREVKELNLTSPEVVTKYKEAAEIVNNALQLVVNECKPKAKIVYLCQKGDSYIIEYATGNMYKHAKKGVAFPTCVSVNNTVGHLSPLANDGRVLEE GNIVKIDIGCHIDGFIALVAHTHVVGDGAVTGRAADVIAASNTAAEVALRLVRPGKKNKEVTDAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNEVDFEFE ENEVYAVDIMNRSHTAAAEGATAKMNRNHTAAAEGATGTGGEYQETSAGASDDGPSHDDFQKLRKLRNSTNEGRSAAHPESYTLTEAVKGGKEELIRQVA RSWLKRYQKDRTPAMAELLTFVFQACGARNQIENDMVSRQDIDEVVGGCLPIREKGEIEHWKLLLVWHILVIESKFGPLLDGYLFDKAIKFIISLSGFVA GHVATMMGLQLINELIGIANSLRSKIKGNEAMRNAAKKHGTVVTRLEEFNEANPTSRPDVLKLEELMSTVFERLFCHRHRDVEQKIQSKGIKYLGGWIKS YQSLFLENSKTKFLGWALNDESARVRNKSLRALESLYNVAVVPPGLIVFSGIYYNRIVRLVGLRLFPCRVQLGLQRGHRDLLLGLQLINLHEQLRFQHLR LSNLHGLLRFQTLSLSSVLCQHNLDPALSVYVIDALWEFMGATKDWDSMVSLFWDLNYARFLTDDDTTNLGRILFASIRKAVGERIVPSSDNPEQDDNSA QRELYESRREAITKAMVGNYLRLVAKVWNEKLKMPSVVEIIFYFDWECFSKDETLDEYIPFFSEAFFEKEEQEALRSCLRTLNFFLSKGGELKGLAEEYL NSIEIQLVENLKSDMKKGDTGNVHLVSLKRLYELQLSKSVPLEGLFEDFAIFLGKADKEVCIIIAEAWCKFRPGNFQSSELESLGYSPEESDILKFLKLC EKVADVLKDERVKNDVEAVMIAAANFAETTHSVHQVMLTKHKAQAKSLKAQQAMEIAQSKMLEAQLLMEVYELKSEKKVLMPPLKSKLHALKKKLYGIKV RRLHRRSGSSPTAIQKPARKKAKTNNVDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	2.0	0.8806
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022077 [exp]	2.4	0.8558
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10020769 [exp]	5.5	0.8053
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	8.7	0.8477
AT1G27350			Ribosome associated membrane p...		Lus10011355 [exp]	10.6	0.7772
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	11.0	0.7796
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	12.2	0.8177
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10016026 [exp]	13.0	0.7572
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	14.7	0.8507
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	15.2	0.8374

Compare expression of checked genes

Lus10023798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.