Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34150 397 / 2e-137 Pseudouridine synthase family protein (.1) AT3G06950 93 / 3e-21 Pseudouridine synthase family protein (.1) AT1G20370 48 / 7e-06 Pseudouridine synthase family protein (.1) AT1G76120 47 / 1e-05 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039480 [exp] 76 / 5e-15 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) Lus10037366 [exp] 59 / 1e-09 AT1G09800 461 / 4e-163 Pseudouridine synthase family protein (.1) Lus10035791 [exp] 55 / 4e-08 AT1G09800 414 / 7e-145 Pseudouridine synthase family protein (.1) Lus10005641 [exp] 48 / 8e-06 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10021231 [exp] 46 / 2e-05 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10026423 [exp] 46 / 3e-05 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10042233 [exp] 45 / 6e-05 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1) Lus10022949 [exp] 42 / 0.0006 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061650 [exp] 441 / 9e-155 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1) Potri.008G206200 [exp] 82 / 1e-17 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 46 / 2e-05 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 45 / 6e-05 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10023799 pacid=23151450 polypeptide=Lus10023799 locus=Lus10023799.g ID=Lus10023799.BGIv1.0 annot-version=v1.0 ATGTACTTCGGTCCAAGATTTTATGGTTTTGCATCAGAGGCACAGATGGATCCTACGGTCGAGTCAGAAATTTTTGAAGCTCTGAAGCAGACAAGGCTCT TTGTTACCGAAAAGAAGGAAGCTCAGTACTCTAGATGTGGTCGAACTGACAAAGGAGTATCTGCTGTTGGGCAGGTGATTTCTTTGTTAGTACGGTCAAA ACGCTGTCATGTTAACAAAAACGCAACAGATTCATGTGAAAATTTCGCCGAGGGACAAAATGAAATTGATTATGTAAGAGTACTGAATCGAGCACTTCCA AAAGATATCCGAATCTTGGGTTGGTGTCCCGTTCCTTGTGATTTCCATGCAAGGTTCAGCTGTTTAGGCAGAGGCTATAAATATTTGTTTTGGAGTGATT CATTGGATCTTCAGGCTATGGAGACAGCTGGTAAAAAATTCCTTGGGCAACATGACTTCAGGAACTTCTGTAAGATGGATGCAGCAAATGTCCACAACTA TATGCGGCGCATAGATTCATTTGAAATTTCTCCTGCCTATATGAGGGTTGAGGGTAACCAACTTTATGCAATCAAAATTGAAGGCAGTGCTTTTTTGTGG CACCAAGTTCGGTGTATGGTTGCTGTGCTATTTATGGTCGGTCAAGGCTTTGAATCTCCTGATGTGGTAGATGTATTACTAGATACAGACAGGGTACCAC GTAAGCCTCAGTATGCCATGGCTACAGAAATTCCATTGATTCTTTCTCGTTGTGAATTTGAAGGCCTCAACTTTGCTTGTTCATCAGGTGGGGAGCAAGA CCTGTATATGCACTTTGAAAATGAATGGCGAGCCTACCAACTGCAAGCTGCTATCTATCACGAGGCTATGTTGAGCTGTCTGGCTCCAACAGGTGAGCAG CACCAGGGAAACATGAATGGAAAGATGAGAAAGAAAAGTTCCCATATTTCACTCATGTCAAGGCCGACCGAGCCATCGTACGAGGAGAGGCTTGTTAAGT TGAAACTTGCAAATTGA
AA sequence Show only first row Show all	>Lus10023799 pacid=23151450 polypeptide=Lus10023799 locus=Lus10023799.g ID=Lus10023799.BGIv1.0 annot-version=v1.0 MYFGPRFYGFASEAQMDPTVESEIFEALKQTRLFVTEKKEAQYSRCGRTDKGVSAVGQVISLLVRSKRCHVNKNATDSCENFAEGQNEIDYVRVLNRALP KDIRILGWCPVPCDFHARFSCLGRGYKYLFWSDSLDLQAMETAGKKFLGQHDFRNFCKMDAANVHNYMRRIDSFEISPAYMRVEGNQLYAIKIEGSAFLW HQVRCMVAVLFMVGQGFESPDVVDVLLDTDRVPRKPQYAMATEIPLILSRCEFEGLNFACSSGGEQDLYMHFENEWRAYQLQAAIYHEAMLSCLAPTGEQ HQGNMNGKMRKKSSHISLMSRPTEPSYEERLVKLKLAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	0	1
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	2.2	0.8796
					Lus10023643 [exp]	4.0	0.8364
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	6.2	0.8698
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10032684 [exp]	6.7	0.8374
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	6.9	0.8600
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	8.5	0.8659
AT5G58100			unknown protein		Lus10027581 [exp]	9.2	0.8621
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	9.9	0.8722
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10009912 [exp]	13.1	0.8329
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	14.5	0.8443

Compare expression of checked genes

Lus10023799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.