Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15200 272 / 3e-87 protein-protein interaction regulator family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003959 [exp] 533 / 0 AT1G15200 395 / 6e-135 protein-protein interaction regulator family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208200 [exp] 335 / 1e-111 AT1G15200 314 / 1e-103 protein-protein interaction regulator family protein (.1.2.3.4) Potri.003G021900 [exp] 269 / 1e-86 AT1G15200 290 / 6e-95 protein-protein interaction regulator family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04696 [flax] [poplar] Pinin_SDK_memA pinin/SDK/memA/ protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10023800 pacid=23151455 polypeptide=Lus10023800 locus=Lus10023800.g ID=Lus10023800.BGIv1.0 annot-version=v1.0 ATGAACGCATCAGCTGCTGTGGCGGAGAAGACCGAGGAAGAGCTACGCAAGGAGATCGATGAGCTCCATCGACAGCAGCGCCAGATTACTGAGCGGTTAC GTGATCCTAGAGGCATCCGACGCGGAAATCTTCCCGCTGGCGGGCCGAGGAACTTCGCCTCTAATGGCGCACCTCACAGAGGGTTTGTTCGCCCAGCTGA CCGGAATGACAATGGGGATCAACCTCCTGCAAAGAAACGGCTTCTCTCTGCTATTTTCAAGGTTGAAGATGGAGAGATAGTTGAGGACGATGTGAAGAAT CATGTTACTGAGGAAAGATCTGATGTTGCTGCGATTAGTAATCAAGATGAACAAAAGCTACTAAGTTTACGTCCAAGTAGTCAGTCTTGGAACCAACGAC CACGAACAAGAGAGTCTGACATTCCTTCTGATGACCACATGCCGAGGGTGTTGCCCAAGAACGAGGACCCAAGTTTGGTTAGCAGAAACAAGAGGATGTT GGGGCAACTTCTAGGTACCTTGGAGAAATTCAGAAAAGAGGATATAAAGCTCTCAGGGACTGAGGCATACACAAAAAGGTCAAATGCTTTGCAAAAGGCT GAGCAAAGAGCACGTGAAGAAAGCGAAAGGCTGAGACAGGAGGAGCGTGAAAAATTAGCTGAAAAAAGGAGAAGAGATCTGGTTCTTAGGGCCAGAGTTG CTGCAAAGGCAGAAGAAAAGAAGTTGGAATTACTGTTCCTTCGTTGGACTGATCATCAGAAAAAGCTATCCAATTTTATAAGGCAGGCAGAGCCTCCAAT ATATTATATGCCAAAGAAACCACTGGATGAAGATGAAACCCTGCAACAGCAGCGCGGTGAACAGTTATTAGCAGAATGGAAGGCGGGGAGAAGAGAGGAA GTGTCGGAGTATCAGAAGCAGATAGAGGTTCAGTACCTGGAAAATGTTGAGAAAGAGGTGGAGAGGTGGAATAATAATAATAATGCAAGGAATGGTAGAA AAGGTAACAAGGATGTGAACTTACAAGAGACGATGGACCAAGAGCTGGAGAGCCATAGACTTGAGCACGGTCCAAAAACAAGGAAGATACCAGGTGGTGG CGATAGTGATGAAGAAGATGAGGTGGAGGATATCAACGTCGGTGAGGATGATAATGACATGATGGACGATGTGCTAGTCGTCGTTGAGGAAAAGGGTGTC AAAGTTGATGATGCAATAACAAACACACAAGATGACAACGAGATTGGCACCACGATTACTCATGATGATGATGTGGTTAAGCAGCAACTAGAATAA
AA sequence Show only first row Show all	>Lus10023800 pacid=23151455 polypeptide=Lus10023800 locus=Lus10023800.g ID=Lus10023800.BGIv1.0 annot-version=v1.0 MNASAAVAEKTEEELRKEIDELHRQQRQITERLRDPRGIRRGNLPAGGPRNFASNGAPHRGFVRPADRNDNGDQPPAKKRLLSAIFKVEDGEIVEDDVKN HVTEERSDVAAISNQDEQKLLSLRPSSQSWNQRPRTRESDIPSDDHMPRVLPKNEDPSLVSRNKRMLGQLLGTLEKFRKEDIKLSGTEAYTKRSNALQKA EQRAREESERLRQEEREKLAEKRRRDLVLRARVAAKAEEKKLELLFLRWTDHQKKLSNFIRQAEPPIYYMPKKPLDEDETLQQQRGEQLLAEWKAGRREE VSEYQKQIEVQYLENVEKEVERWNNNNNARNGRKGNKDVNLQETMDQELESHRLEHGPKTRKIPGGGDSDEEDEVEDINVGEDDNDMMDDVLVVVEEKGV KVDDAITNTQDDNEIGTTITHDDDVVKQQLE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	0	1
AT1G30140			unknown protein		Lus10024751 [exp]	1.0	0.9692
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	2.0	0.9561
					Lus10014678 [exp]	2.4	0.9457
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	2.4	0.9390
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	3.2	0.9396
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	3.3	0.9291
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009047 [exp]	4.5	0.9309
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	4.9	0.9434
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	5.0	0.9180
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	5.7	0.9234

Compare expression of checked genes

Lus10023800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.