Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15190 113 / 4e-29 Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003958 [exp] 566 / 0 AT1G15190 129 / 1e-34 Fasciclin-like arabinogalactan family protein (.1) Lus10015081 [exp] 143 / 4e-40 AT1G15190 108 / 4e-28 Fasciclin-like arabinogalactan family protein (.1) Lus10023183 [exp] 86 / 3e-19 AT1G15190 67 / 3e-13 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G306800 [exp] 69 / 6e-13 AT1G15190 52 / 8e-08 Fasciclin-like arabinogalactan family protein (.1) Potri.019G002300 [exp] 57 / 6e-09 AT1G15190 93 / 3e-22 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023801 pacid=23151428 polypeptide=Lus10023801 locus=Lus10023801.g ID=Lus10023801.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAACTGTTTCTTGATATTCCGATCATCTTCATCAACATCCTCATCGTCGCCGCCACCACCACAATCCCTACTCCGGCGACTTCCATTCCTA CTGATTCACTGGACTACGTCCTCTACTTCCTCCGCAGCCGCGGCCACTCACTCTTCGCCAATGCGATCGCCACTTCCGATCTCCTATTCGACGTCCTCGC TCTCCCTTCCGTCACAATCTTGCCTCCATCAGATCCAGCCCTATTCGCCATGGACATGACGGAGTTACCTTCCTTCTACCTCGGTGTTCTCCGCATCCAC GTCATTCCTTTCCGCATCGACCTCAGCTACCTCCAGAACAACGCTTCTCTACATACTCTGGTCCTCTCTCGCCGCCTCCACGCCACCAGAGGCACTGACG ATCTCCGACTTGACGGCGTGCAAGTCCTCTTCCCGTCTCTTTACGACTCCAACAACGTCGCCGTATTTGCGCTTCACGGTATGCTCCCTCCGCGCGTCCC ACGGCAACGGAATCGAACGGTTATTCCTCCGGTTCCGATATCTAGTGCTACGAATTTCTCGTCTCCGGAAGTAGCAGGCAACAGCAGCACGATAGTTCTT TTTCCGCCAACATTATCAGCGCCAGATAACGTTTCCGTTCTTCAATTTCCTCACAATCAGACTTTACATCATCATCGTCATCATCATCATCGCCAGCATC CTCCGATCAATTATGGATCCCCTGCTCTTCTTCCGAATGACCAGAGCTCCACAATCTCGATGGTTTCACCTTCGACCAAGGCGGCCAACGCCGTTTCTTT TAGTCCGGAGATTTCAGGGCACTACCAGCAGACTCCAGCATTTCCTCCAATTACGACGGCGGAGATGAGTTTGCCTCCCGTCGTTGGCAGCCTATTTCTT CCTCCTGATCAGAAACACACTTTTGAGCCGATCTCAGCTCCGTCTCCACAGGATATCTCTGTTTCCGTCACTCCTATTCTGACGCCGTCTGTGAGTCCGC CAGTTGATCTGACAGATCCGGCACCAGCGGACAGTGACTTTGACGATAATGTGTTGCCGCCGATAGAGTGGATAGCAAGCGTCGATGTTCCTCCGTCCGG CAACGACTATGGGGCGACGAAGAAGGATGAAGGGAATTAG
AA sequence Show only first row Show all	>Lus10023801 pacid=23151428 polypeptide=Lus10023801 locus=Lus10023801.g ID=Lus10023801.BGIv1.0 annot-version=v1.0 MKKKLFLDIPIIFINILIVAATTTIPTPATSIPTDSLDYVLYFLRSRGHSLFANAIATSDLLFDVLALPSVTILPPSDPALFAMDMTELPSFYLGVLRIH VIPFRIDLSYLQNNASLHTLVLSRRLHATRGTDDLRLDGVQVLFPSLYDSNNVAVFALHGMLPPRVPRQRNRTVIPPVPISSATNFSSPEVAGNSSTIVL FPPTLSAPDNVSVLQFPHNQTLHHHRHHHHRQHPPINYGSPALLPNDQSSTISMVSPSTKAANAVSFSPEISGHYQQTPAFPPITTAEMSLPPVVGSLFL PPDQKHTFEPISAPSPQDISVSVTPILTPSVSPPVDLTDPAPADSDFDDNVLPPIEWIASVDVPPSGNDYGATKKDEGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15190			Fasciclin-like arabinogalactan...		Lus10023801 [exp]	0	1
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	5.7	0.8598
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	8.0	0.8380
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10021554 [exp]	23.9	0.7673
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10013959 [exp]	40.6	0.7852
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	47.8	0.7031
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	50.3	0.7656
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10021992 [exp]	55.3	0.7540
					Lus10006216 [exp]	55.7	0.7674
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	87.5	0.7419
AT5G66660			Protein of unknown function (D...		Lus10018880 [exp]	95.6	0.6863

Compare expression of checked genes

Lus10023801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.