Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64200 215 / 5e-68 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G18810 75 / 2e-15 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT1G55310 67 / 1e-12 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G13570 67 / 1e-12 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT3G10400 66 / 3e-12 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT5G06210 62 / 1e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 61 / 1e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 59 / 6e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G61030 62 / 1e-10 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G73530 60 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003957 [exp] 319 / 2e-109 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10029426 [exp] 66 / 1e-11 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10002699 [exp] 64 / 2e-11 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10034685 [exp] 64 / 3e-11 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 63 / 3e-11 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10000953 [exp] 64 / 4e-11 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10042320 [exp] 60 / 8e-11 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 60 / 8e-11 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10003593 [exp] 63 / 9e-11 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023800 [exp] 215 / 1e-68 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G095800 [exp] 207 / 1e-65 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.005G165400 [exp] 206 / 1e-64 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.010G026100 [exp] 74 / 5e-15 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.008G196700 [exp] 71 / 6e-14 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.012G061600 [exp] 71 / 7e-14 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.016G062500 [exp] 70 / 7e-14 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 70 / 8e-14 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.001G006400 [exp] 70 / 9e-14 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 70 / 9e-14 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10023802 pacid=23151418 polypeptide=Lus10023802 locus=Lus10023802.g ID=Lus10023802.BGIv1.0 annot-version=v1.0 ATGTCTCACTTTGGAAGATCAGGCCCGCCTGACATCGCCGATACTTACTCACTTCTCGTCCTCAATATCACTTTCCGTACTACTGCTGACGATCTTTTCC CTCTCTTCGACAAGTATGGCAAGGTCGTTGATATATTTATTCCCAGAGATCGAAGGACTGGTGACTCTCGTGGGTTTGCATTTGTACGATACAAATACGC AGACGAAGCACAGAAGGCTGTGGAAAGGCTGGATGGCAGAGTTGTCGATGGTCGTGAGATTACAGTACAATTTGCCAAATATGGACCTAATGCTGAGAAG ATTCAGAAAGGAAGGATCATAGAACCAGTTTCAAGATCAAGAAATGGGTCCAGGAGTCGCAGTCCTCGACGGAAGTATGATAAAGCCTTAGCTGCAGCTA TGCTTTCAGTAACTGATATTAAGCACCGAGATGAATCATACAGGGATAAGGATTACCAGAAGAGAAGCCGGAGCAGGAGTTTGGACAGACAAGAACGTGA CAGATACCGCAGCAAAGACAGAGACTACCGCAGACGAAGCAGGAGCCACAGCCTCAGTCCTGATTATGCCAGAGGCAGGGGAAGAGGCCATTTTGATGAT AAGCATCAAAATACCAGTCGGTCAATCAGTCGATCACCACGTAGGCGTTCTCCAGTTCCCCGTACGAGTCTTTCCCCACTGAGGGTCTCTCCAAAGGATG AAATCATAGACAGACGTAACCAAGGTGCCCGCTCTCCAAGTCCTCGGACTGCCTCCCTGCAGGATCGCCTTGTTGCATCCCGTAGTGCATCTCCAAGGAA TTCTGATGCTGAGCTACACAACTGGTTTGACTCATGTTTTCTGTACTTGTTTTTGGCAGGAATGATTGTATCGCCACATGGGAGTCTCAGTGTCGTTGAT GGTGGAACTGCAGAATTTGAATCATTGAACTTGGAGGATCGTGATTTTGATTTTGACAATGCGGCAGATGGCTACGATGTTACCCTATTGTGA
AA sequence Show only first row Show all	>Lus10023802 pacid=23151418 polypeptide=Lus10023802 locus=Lus10023802.g ID=Lus10023802.BGIv1.0 annot-version=v1.0 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPNAEK IQKGRIIEPVSRSRNGSRSRSPRRKYDKALAAAMLSVTDIKHRDESYRDKDYQKRSRSRSLDRQERDRYRSKDRDYRRRSRSHSLSPDYARGRGRGHFDD KHQNTSRSISRSPRRRSPVPRTSLSPLRVSPKDEIIDRRNQGARSPSPRTASLQDRLVASRSASPRNSDAELHNWFDSCFLYLFLAGMIVSPHGSLSVVD GGTAEFESLNLEDRDFDFDNAADGYDVTLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10023802 [exp]	0	1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	2.4	0.9116
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	3.2	0.9127
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10023926 [exp]	4.5	0.8712
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	11.6	0.8957
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	12.6	0.8937
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10019976 [exp]	14.0	0.8558
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	16.6	0.8956
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10042240 [exp]	17.0	0.8838
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10015039 [exp]	23.0	0.8820
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	25.9	0.8576

Compare expression of checked genes

Lus10023802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.