Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31810 697 / 0 AFH14 Formin Homology 14 (.1) AT2G25050 501 / 6e-157 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G07740 491 / 4e-149 actin binding (.1) AT5G58160 476 / 1e-145 actin binding (.1) AT3G32400 450 / 1e-145 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G07770 400 / 1e-123 Actin-binding FH2 protein (.1.2) AT5G07650 368 / 1e-110 Actin-binding FH2 protein (.1) AT5G07780 344 / 3e-106 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 351 / 2e-104 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 231 / 5e-68 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003956 [exp] 998 / 0 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10007447 [exp] 513 / 1e-160 AT5G58160 604 / 0.0 actin binding (.1) Lus10036612 [exp] 513 / 4e-158 AT5G58160 608 / 0.0 actin binding (.1) Lus10035830 [exp] 504 / 4e-156 AT5G58160 619 / 0.0 actin binding (.1) Lus10024450 [exp] 489 / 2e-151 AT5G58160 600 / 0.0 actin binding (.1) Lus10015724 [exp] 483 / 2e-149 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 421 / 3e-125 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 224 / 1e-64 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 202 / 4e-59 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103800 [exp] 769 / 0 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.006G185601 [exp] 520 / 7e-170 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G019600 [exp] 522 / 7e-162 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G108000 [exp] 513 / 9e-161 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G263700 [exp] 517 / 2e-160 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.012G067900 [exp] 512 / 2e-158 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 501 / 6e-154 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 437 / 1e-140 AT5G58160 598 / 0.0 actin binding (.1) Potri.010G037900 [exp] 128 / 6e-30 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.007G054900 [exp] 127 / 2e-29 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10023804 pacid=23151443 polypeptide=Lus10023804 locus=Lus10023804.g ID=Lus10023804.BGIv1.0 annot-version=v1.0 ATGTCTCTTCTCAGTAGATTCTTCTACAGAAGGCCGCCGGATGGATTGCTCGAGCTTGTCGACAGAGTATATGTGTTCGATTCTTGCTTTTCCACTGAGG TTTTGCCTGATGGTTTGTACGAAATGTATTTACACGAAGCCGTTGGGGAACTGTATGGAGAATTTCCCGAGTCTCGTATACTTGCTTTTAATTTCCGCGA GGGCGAGAAGCGGAGTCAATTCGCTGAGATATTGTGCCAGTATGATGTTACTGTTATGGATTATCCACGGCAATACGAAGGTTGCCCACTGTTACCTTTG TCTCTGGTTCAACATTTCCTTCGAGCCAGTGAGAGCTGGCTTTCACTTGGGAACCGTCAAAATATTATCCTCCTTCATTGCGAGAGAGGGGGCTGGCCAG TCTTGGCCTTCGTATTGGCTAGTTTCTTGATTTTTAAGAAGCTCCACAACAGTGAACGAAGAACACTCGAGCTTGTTCATCGTGAGGCTCCAAAGGGCTT CTTGCAACTTTTGTCACCGCTTAATCCTTTCCCTTCTCAGTTGCGTTACCTTCAATATGTGGCCAGAAGAAACATTGCATCAGAATGGCCCCCTCCTGAA CGATTCCTTTCTTTAGATTGTCTCATTCTCCGTGCCATTCCAAGCTTTGACTCAGATAATGGCTGCAGACCAGTCATCCGTATTTTTGGTAGAAATATGC ATTCTACTGGTGGACTTTCGACCCAGATGCTCTTCTCCATGTCCAAGAAGAAGAAGTCTACCATTAAACATTACCGGCAGGCTGACTGTGATGTGATCAA AATTGACATCCAGTGCTTGGTGCAAGGTGATGTTGTGTTGGAGTGTGTGCACTTGGACTTGGATCCTGAAAGGGAAGTCATGATGTTTCGTGTAATGTTC AACACAGCCTTTATACGATCCAACATATTGATACTCAACTCTGATAACCTGGACATTCTTTGGGATTCAAAGGAACAATATCCAAAAGGATTTCGAGCAG AGATTTTATTCGGCGAAGTTGAGAGTTCCTCGCCTCCAAAGGGCCAAAATCCAACTTCAATTTTGAATGGTGAAGTGAAAGGTGGATTACCAATTGAAGC TTTTTCTAGGGTTCAAGAACTCTTCAATGGCTCAGAATGGGTTGATAACAATGATGATGCTGCTTTATGGCTACTGAAGCAACTTTCTGTTTTCAATGAT GCTAGAGAACTTTCAAGATTTCAAGCTAAAGGTAGTTCATATGCATCACCCTTTGACTCTGAAGAAGAAAACAATGCCTCTAGCACTGCAGATAGTTCAG ATGAAGCATTTGATTTCATTCCAAAGTCTTCAATAGACTCTATGGGGTCATTTGTGCGCAGCACTCTTAATTCCACAGACTTGCCAGTGGAAACTGATGG CCCAGTTGACCCCAACATTAGTTTTGAAACCGAAGGATTGTGTCCACTTGACCTTGAATCTGTTTCATCCTCTCTCGATAAGCAACAGGTTGCTTCCAGT GAGGAAGCTGAACTTTCTTCAGAGGGTCAACGTTCATTTGCACACACATCTATTCCTTCTGAACCCACCGCAGCTATTGATTCTTCTAGGAAGCAGGGAC CATCTCCTCCTCCACCACTACCTCCTCCTCCTCCTTGTTCCACTCCGAGTTCATCACTTTTAACCCCACCACCACCACCACTGCCGCCATTTCTACCTCT ATCTTCTACCTCTACGCCATTGTCTTCTCCACTGCTGCCGGCACCACCACCACCACCACCACCACTTGTACCTCTTTCTTCTACTTCTATGTCATTGACT TTGCCACAGCAGCCGCCACCACCACCACCACCATTTGCCTCCAAAACTAATAGTATCCAGCGGCCGCCACCTCCTCCACCACCACCATTTTCCTACAAAA TCAATAGTATCCAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCACCACCACCATTTGCCTCCAAAACTAATAGTATCCAGCG GCCGCCACCTCCTCCACCACCCCCATTTGCCTCCAAAATCAAAAGTATCCAGCCGCCGCCACCTCCTCCACCACCACCCTTTTCCTCCAAAACCAATAGT ATCCCGCCACCGCCACCACCACCACATCCTACATTGACATCTTCAACATCAGGTTCTAATGCAAGTAGAAGTGGTCCTCCACCTCCACCTCCACCTCCAG TCCCAGCTCCACTTGCCGGTGGTGGTAACCTTGGTGCTGCCTCAAGGCCACCATCTTGTCCTCCTGCTCCTCCCCCGCCCCCTCACCCTCCTGCACCTCT TACACGTACTAGCTTTGTCTTGTCACCTGCACCTCCCCCCCCACTCCCAGCACCGAGGCCTCCAGCGCCTCCTCCAGTACCTGGCCGTGCTGGTCCTCCC CCACTGCCTGGAACAAATGGTGCAAGTGTGCCACCGCCTCCACCTCCTGGCATTGGTAGGGCCAGAACTTCTTCTGTTCTTAGTGGTCCCGCAAGAGGGA GAGGTACTGCATCATCTGGAGGTGTCTCTAAGAGAACTTCTTTAAAGCCCTTGCATTGGGTGAAAGTTACTCGAGCTGTGCAAGGAAGTATGTGGGCTGA TTCACAGAAGCAGGAGAACCAATCAAGGGCACCTGATATTGATATATCAGAACTTGAGAGCTTGTTCTCAGCTGTATCAGCTTCAGAAGGAAGTACTGCT AGCAAAATTGGTGGTAGACGTGTTTCTAACATCAATAAGCCTGAGAAAGTACAGCTGGTTGACTTACGCAGAGCATATAATTGTGAAATAATGCTTTCTA AAGTTAAGATGCCTTTGCATGAAATGATTAATGCGATTCTTGCTTTGGATTCTTCAACGCTGGATATTGATCAGGTTGAAAATCTTATCAAATTTTGTCC AACTAAAGAAGAAATGGAAACGCTGAAGAATTTTACTGGTGACAAGGAAAGGCTTGGAAAATGTGAACAGTTCTTCATGGAGCTGATGACCGTTCCCAGA GTGGAAGCAAAATTACGTGTATTTGCTTTCAGGATAACTTTCTCAAGTCAGGTGAATGATTTAAGATGTAATCTCAATACTGTGAATGATGGTGCTAGAG AGGTGAAAGAGTCTGAGAAGCTGCGTCAGATTATGCAAACAATTCTTACACTGGGAAATGCTTTGAATCAAGGCACTGCACGAGGATCTGCCGTGGGATT CAAGCTGGATAGCCTCCTTAAGTTGTCTGATACACGTGCAAGAAACAACAAAATGACCTTAATGCACTATTTGTGTAAGCTCCTTGCTGAGAAAATGCCA ACATTGCTTGACTTTGGTAAAGACCTTATCCACTTAGAAGCTGCATCTAAGATTCAATTGAAAACTCTGGCCGAAGAAATGCAAGCTGTGAGTAAAGGTC TTGAGAAGGTTGAGCAGGAACTTGCTGCTTCAGAAAACGACGGTGCTATATCTGCAGGGTTTCAAAAGGCAAGTCAGATTGAATGTTCTAGGTTTTGCCT TGTTGGCTTGCCATGCTCTTATTACTGGGAGGCTTTCTCCACTGGTATTAAAATAATGTACTCTCTGGTATTGAAGAACTTCCTTCATACTGCTGAAGCT GAAGTAAGGTCGCTTATTTCTTTGTACTCTGAAGTGGGAAGAAATGCAGATGCGTTGTCTCAGTATTTTGGAGAGGATCCAGCTCGATGCCCCTTTGAAC AAGTGACACAAATCTTGGTGGTGTTCGTTAAAATGTTCAACAAGTCTAGAGATGAAAATGAAAAGCAGGCCGATGTTGAAAAGAAGAAACTGGAAAAGGA AGCTTTGAAAGAGAAGTCGGTTGCCAAGAAAGATGACAACGACAAGTTGAAACTTGGATTTCAAATTCAGAGACATGCTACCTGA
AA sequence Show only first row Show all	>Lus10023804 pacid=23151443 polypeptide=Lus10023804 locus=Lus10023804.g ID=Lus10023804.BGIv1.0 annot-version=v1.0 MSLLSRFFYRRPPDGLLELVDRVYVFDSCFSTEVLPDGLYEMYLHEAVGELYGEFPESRILAFNFREGEKRSQFAEILCQYDVTVMDYPRQYEGCPLLPL SLVQHFLRASESWLSLGNRQNIILLHCERGGWPVLAFVLASFLIFKKLHNSERRTLELVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIASEWPPPE RFLSLDCLILRAIPSFDSDNGCRPVIRIFGRNMHSTGGLSTQMLFSMSKKKKSTIKHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMF NTAFIRSNILILNSDNLDILWDSKEQYPKGFRAEILFGEVESSSPPKGQNPTSILNGEVKGGLPIEAFSRVQELFNGSEWVDNNDDAALWLLKQLSVFND ARELSRFQAKGSSYASPFDSEEENNASSTADSSDEAFDFIPKSSIDSMGSFVRSTLNSTDLPVETDGPVDPNISFETEGLCPLDLESVSSSLDKQQVASS EEAELSSEGQRSFAHTSIPSEPTAAIDSSRKQGPSPPPPLPPPPPCSTPSSSLLTPPPPPLPPFLPLSSTSTPLSSPLLPAPPPPPPPLVPLSSTSMSLT LPQQPPPPPPPFASKTNSIQRPPPPPPPPFSYKINSIQQXXXXXXXXXXXXXPPPPPFASKTNSIQRPPPPPPPPFASKIKSIQPPPPPPPPPFSSKTNS IPPPPPPPHPTLTSSTSGSNASRSGPPPPPPPPVPAPLAGGGNLGAASRPPSCPPAPPPPPHPPAPLTRTSFVLSPAPPPPLPAPRPPAPPPVPGRAGPP PLPGTNGASVPPPPPPGIGRARTSSVLSGPARGRGTASSGGVSKRTSLKPLHWVKVTRAVQGSMWADSQKQENQSRAPDIDISELESLFSAVSASEGSTA SKIGGRRVSNINKPEKVQLVDLRRAYNCEIMLSKVKMPLHEMINAILALDSSTLDIDQVENLIKFCPTKEEMETLKNFTGDKERLGKCEQFFMELMTVPR VEAKLRVFAFRITFSSQVNDLRCNLNTVNDGAREVKESEKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMP TLLDFGKDLIHLEAASKIQLKTLAEEMQAVSKGLEKVEQELAASENDGAISAGFQKASQIECSRFCLVGLPCSYYWEAFSTGIKIMYSLVLKNFLHTAEA EVRSLISLYSEVGRNADALSQYFGEDPARCPFEQVTQILVVFVKMFNKSRDENEKQADVEKKKLEKEALKEKSVAKKDDNDKLKLGFQIQRHAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31810		AFH14	Formin Homology 14 (.1)		Lus10023804 [exp]	0	1
AT1G27595			unknown protein		Lus10028229 [exp]	3.0	0.9300
AT1G27595			unknown protein		Lus10007230 [exp]	4.9	0.9240
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10008428 [exp]	11.8	0.8974
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	18.2	0.9099
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	21.6	0.8981
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10011489 [exp]	29.4	0.8918
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	32.4	0.8885
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10023991 [exp]	37.2	0.8811
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	37.5	0.8733
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	38.7	0.8853

Compare expression of checked genes

Lus10023804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.