Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45400 728 / 0 ATRPA70C Replication factor-A protein 1-related (.1) AT4G19130 716 / 0 Replication factor-A protein 1-related (.1) AT2G06510 587 / 0 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G08020 295 / 4e-89 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 275 / 2e-81 ATRPA70D Replication factor-A protein 1-related (.1) AT1G52950 67 / 3e-11 Nucleic acid-binding, OB-fold-like protein (.1) AT1G60650 45 / 0.0002 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G43590 45 / 0.0002 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003955 [exp] 1472 / 0 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10034737 [exp] 488 / 1e-163 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 452 / 2e-150 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033272 [exp] 396 / 7e-126 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 336 / 1e-108 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10040517 [exp] 282 / 4e-84 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 279 / 3e-83 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 280 / 9e-81 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10034736 [exp] 131 / 5e-34 AT5G45400 90 / 3e-20 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G102700 [exp] 952 / 0 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 661 / 0 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.015G057300 [exp] 291 / 1e-87 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.001G318100 [exp] 42 / 0.001 AT3G42860 211 / 8e-66 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10023805 pacid=23151431 polypeptide=Lus10023805 locus=Lus10023805.g ID=Lus10023805.BGIv1.0 annot-version=v1.0 ATGGTGGATCTGACAGTGGGCGCCATTGCTCATATCACTGGAGGGTCTTCTGTGGTAGACTTCCAGCCTATAGTACAGGTGACGGAGCTGAAGCAGGTCC ATATGAAACAGCAGCAGCATCAGGCACCAGAACGGTTCAAGTTGGTGATATCCGATGGTTCGCACCTGCAACAGGCTATGCTCGGCACCCAGATCAATTA CTTGGTGAAAGATAATGAATTGAGGACCGGCTCCGTTATCCAGTTGGTCAAGTTCACATGCACCACCGTCCAACACCGCATGATTGTTATAATAGTCGAA TTGAAAATCATCGTTGAAGAATGTGGTCTAATTGGGCATCCTGCATTATTGAGACCTCCAGGGCCATTCCCTACGTTGACAGATCGACCAAGTCCCCAGT TATCTGGTGGTGGTGGCAGGGTTGTTTCAAATTTGGATTCGGATCAACCGATGAATGTATACTCTAATCTTCGACCATCTGGTGGCAGTAATTCTGCTGG TAGGGCTGTTACAAATTTGGATCCGGCTGCTGCTTCTGTTCAGTCTCCTAGGGTCCATCCACCAGACAGTGGGTTTCAGTATGATGCCGGTAGGAATGTT AAAACTAGTGTATCTTCTTTCAGCATGAAGTCCGAAAGTGGTGTTACACCACTAGGATCGGTGCCATTTTCCAACCAGGCTACTGGCTTACACCACCATA AGCAGGATGGTACACGAGCTTCTTCAGCAAGTTATTCTAATATGTCTCGATCAACATATCAGCAGCCACCTGCAATGTACAACAACAGGGGTCCAATAGC AAGGAATGAAGCTCCTGCAGCAATTTGCCCCATATCTGCTTTGAATCCATACCAGGGTAGGTGGACAATTAAAGCCAGGGTGACAGCAAAAGGCGAAATG AGACACTATCACAATCCTCGTGGTGAGGGGAAAGTATTCTCTTTTGACCTTCTTGATTCTAACGGTGGTGAAATTAGAGTGACTTGCTTTAACGCGGTTG CTGATCAATTCTACCCCTCTATTGAAGTCGGCAGGGTTTATACAGTTTCGAAAGGAAGCTTAAAGCCTGCCCAAAAGAACTTCAATCACCTTAATAATGA TCTGGAAATTTTTCTTGAGAATGGCTCAATTGTGCAGCAGTGTCATGATGACGACAGTTCAATTCCAAGGCAACAATTCCATTTTCGCCTGATTAGTGAG ATTGAGGGGTTGGAAACCAACAGTATCGTTGATCTTATCGGCATTGTATACGTTGTTACTCCAGCGACCTCAATAATGAAGAAAAATGGTACAGAAACTC AGAAGAGAAGCCTACAGTTGAAAGATACGTCTTGCCGTAGTGTTGAATTAACCCTATGGGGAAACTTCTGTAATTCTGAAGGATATGAATTGCAAAAGAA GTGTGACTCAGGGAACTTGCCTATTCTGGCAATAAAATCGGGCAGGATTAGTGACTTCAATGGCAAGGCAGTGGGAACTATTTCTACAAGTCAGCTGTTT ATTGACCCAGATATTGAGGAGGCTGGTAACATGAAACAATGGTTTGACAGGGAAGGGAGGAACGCCTCGTTTGTCTCCATTTCCAAGCAAGTGTCAAGTG CTGGCAAGACTGATGTTCTGAAAACCATCTCTCAAATAAAAGATGAGAGCCTTGGGATGTCTGACACTAAGAAACCAGATTGGATTAGTGTCAATGCAGC TCTCATATTCATAAAGTCTGACAGTTTTATGTACACAGCTTGTCCTATAATGATTGGTGACCGCCCATGTAATAAAAAAGTCTCTGACAACGGAGATGGG AAGTGGCGTTGCGATAGGTGTGATCAAACAGTTGATGAATGTGATTACAGGTATATCCTCCAGGTTCAGATACAAGACCATACGGGCACAACATGGGCTA CTGTTTTCCAGGAATGTGCCGAGCTGCTTATGGGAATGTCTGCTAAAGATCTACACTTTATGAAGTTTGAGCAAGAAGATGACGATGGATTTCTAAAAGT TCTTCACAAAGTTTTGTTTACCAGATATGTGTTTAAGCTGAAAATATTGGAGGAAACATTCAATGATGAAGCACGTGTGAAATCTACTGTTGTCAAGATT GATAAGGTGAACTGTGTTTCCCACTCCAAAGCTCTTCTGGATTTGATGGGGAAGGGTGAATCTGGGAACTTGACTTCTTCATTGCCCAAATCGGAAAGTG GTTACTCAAACATTCCGTCTAGTACCACTGGGATGGGCAATATTGGGAGTGGTGGACAAACAGGATTAACTCATATGGGTTCGCATCAAGTCAGTCAATA CAGTAACCAATATATTTCCCGCTTCACCACAAATAATGACTTTGGGGGACCTGTGTCCTGTATCAGCTGTGGTGACGCAAGCCATAGCTCTATGAATTGT CCTAGCATCATGGGAGGTCCCCAACATCCAGTAGGAGTGGACTATATCAATAGAACTTCCAATGGAGCTGATGCAGGCAGTGGTAGGGGAGGTGAATGCT TCAAGTGTCATCAATCTGGTCACTGGGCCAAAGACTGCCCAGTGTCTGGCAATGGTCCCCAAGCATATGGGAGCAGGTTTGGCGGTTCTTCAATTCAAAA CAGATAG
AA sequence Show only first row Show all	>Lus10023805 pacid=23151431 polypeptide=Lus10023805 locus=Lus10023805.g ID=Lus10023805.BGIv1.0 annot-version=v1.0 MVDLTVGAIAHITGGSSVVDFQPIVQVTELKQVHMKQQQHQAPERFKLVISDGSHLQQAMLGTQINYLVKDNELRTGSVIQLVKFTCTTVQHRMIVIIVE LKIIVEECGLIGHPALLRPPGPFPTLTDRPSPQLSGGGGRVVSNLDSDQPMNVYSNLRPSGGSNSAGRAVTNLDPAAASVQSPRVHPPDSGFQYDAGRNV KTSVSSFSMKSESGVTPLGSVPFSNQATGLHHHKQDGTRASSASYSNMSRSTYQQPPAMYNNRGPIARNEAPAAICPISALNPYQGRWTIKARVTAKGEM RHYHNPRGEGKVFSFDLLDSNGGEIRVTCFNAVADQFYPSIEVGRVYTVSKGSLKPAQKNFNHLNNDLEIFLENGSIVQQCHDDDSSIPRQQFHFRLISE IEGLETNSIVDLIGIVYVVTPATSIMKKNGTETQKRSLQLKDTSCRSVELTLWGNFCNSEGYELQKKCDSGNLPILAIKSGRISDFNGKAVGTISTSQLF IDPDIEEAGNMKQWFDREGRNASFVSISKQVSSAGKTDVLKTISQIKDESLGMSDTKKPDWISVNAALIFIKSDSFMYTACPIMIGDRPCNKKVSDNGDG KWRCDRCDQTVDECDYRYILQVQIQDHTGTTWATVFQECAELLMGMSAKDLHFMKFEQEDDDGFLKVLHKVLFTRYVFKLKILEETFNDEARVKSTVVKI DKVNCVSHSKALLDLMGKGESGNLTSSLPKSESGYSNIPSSTTGMGNIGSGGQTGLTHMGSHQVSQYSNQYISRFTTNNDFGGPVSCISCGDASHSSMNC PSIMGGPQHPVGVDYINRTSNGADAGSGRGGECFKCHQSGHWAKDCPVSGNGPQAYGSRFGGSSIQNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45400		ATRPA70C	Replication factor-A protein 1...		Lus10023805 [exp]	0	1
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	8.1	0.8845
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	10.8	0.8759
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	15.3	0.8825
AT4G10710		SPT16	global transcription factor C ...		Lus10039410 [exp]	17.2	0.8722
AT1G30240			unknown protein		Lus10014364 [exp]	23.7	0.8628
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10037161 [exp]	29.1	0.8568
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	33.9	0.8715
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	38.0	0.8655
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	39.3	0.8653
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	45.1	0.8466

Compare expression of checked genes

Lus10023805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.