Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31490 464 / 9e-162 HXXXD-type acyl-transferase family protein (.1) AT1G78990 212 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT5G16410 201 / 3e-59 HXXXD-type acyl-transferase family protein (.1) AT1G32910 198 / 3e-58 HXXXD-type acyl-transferase family protein (.1) AT1G24430 92 / 6e-20 HXXXD-type acyl-transferase family protein (.1) AT3G03480 91 / 2e-19 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G57840 89 / 6e-19 HXXXD-type acyl-transferase family protein (.1) AT5G41040 88 / 1e-18 HXXXD-type acyl-transferase family protein (.1.2) AT1G27620 86 / 5e-18 HXXXD-type acyl-transferase family protein (.1) AT5G07850 86 / 6e-18 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033327 [exp] 199 / 2e-58 AT1G32910 485 / 8e-170 HXXXD-type acyl-transferase family protein (.1) Lus10006333 [exp] 160 / 2e-44 AT1G32910 428 / 5e-148 HXXXD-type acyl-transferase family protein (.1) Lus10034786 [exp] 137 / 4e-36 AT1G32910 334 / 7e-112 HXXXD-type acyl-transferase family protein (.1) Lus10010786 [exp] 102 / 2e-23 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10035190 [exp] 101 / 6e-23 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10026123 [exp] 100 / 8e-23 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 100 / 9e-23 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10032554 [exp] 95 / 1e-20 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10000319 [exp] 92 / 8e-20 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128100 [exp] 521 / 0 AT1G31490 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.007G003800 [exp] 207 / 3e-61 AT1G32910 533 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 108 / 2e-25 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 97 / 2e-21 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 93 / 2e-20 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 91 / 1e-19 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 91 / 1e-19 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.003G183900 [exp] 90 / 3e-19 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.019G002900 [exp] 87 / 3e-18 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.017G068500 [exp] 86 / 5e-18 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10023806 pacid=23151474 polypeptide=Lus10023806 locus=Lus10023806.g ID=Lus10023806.BGIv1.0 annot-version=v1.0 ATGGAATTATTAGATGATGATTTCCAAGTAACATTTACTGCCAAAAATATTGTGAAAGCAGCAACAGTAACCACCTTGAAGAAGCAGCACGAAACTTTGC CTCTATCAAACCTCGACCTCCTATCTGGACGTTTCCCCGTCACCTACCTTTACATCTACGCCAACCTCCAAAGCAACGATCTCCCGACTATTCTCAGCTC CCTAAGGCTCTCCCTTGCCAAAACTCTCCACTACTACTACCCCTTTTCTGGTCGAATTGTCACGAACCCTGCCACCAGTGAGCCGGAGATCATATGTAAT GACCAAGGTGTGGTTTTTGTCGAAGCTCGTGCCAACATTCCGTTAAAAAGGGTCAATTTCTACGACCTCAACAAGCTAGTGATACAGGGGAAGTTGGTTT GCCTAAGCCCTGACATACCGTTTCAAGTCCAGGTCACCGGTTACACTTGTGGAGGTGTGTCCATGACATTTACATTCGATCACGCCCTAGGAGATGCAGC CTCATTCAGTAAGTTCCTCCTCTCATGGTCGGAGATTTCACAGCATAAGCCATTATCCTGTGTACCTGAGCACAATAGGAGGAGCCTCCTCAGGCCGCGG AACCCACCCACTTACTCTCCAACTATCGACCGTACCTTTGTCAAGTGCACCATTGACGACATTCTTAACATGCCGACACCCATGAGTACCATGGTGAAAC GACTGTACCATATCGAAGCGGGATGCATCAATAGGCTACAAGAGTTGGCCTCTCCCAACAGAACAAAGGTGGAAGCCTTGTCAGCATACATATGGAAGTT GATGGGAAAGAGTATCGATGGTAGCAAATACAAAGAATGCAAAATGGGATGGTTGGTAGACGGAAGAGGTAGGATTGGTGGGAGGCTAAAGGGGAATTCC ATGTCAAATTACATAGGCAATGTGTTGTCTGTGGCCATTGGTGAGGCCAATGTGGATGAGTTGGAAGTCGACTCATTAGCTAAAGTGGCTGGAAAGGTTC ATGACGCAATATCAGAGGCTACGAGAGAGGAGCATTTCTTGGAGGTGATGGATTGGATCGAGTGTCATAGACCCGGATTGATGATGGCGAGGATCGTGTT GGGTGGTGGTGGTGGTCCGGCGGTGGTTGTTTCATCTGGTAGGAGGTTTCCTGTGGGTGAGTTGGAGTTTGGATTTGGTAGACCTGTTTTGGGGACGGTG AGTTCAACGATTGAGAAGATTGGAGTTGGGTATTTCAATCAGAGGGAGAGTGGGAAGAATGATGGTTCATGGACTGTATCTGCTATTTTATGGCCACAAC TTGTTGAGGCATTGGAGTCTGATTCTGTTTTCCAGCCTATTTCACCTGCTCAACATTTCCTCCTCTGA
AA sequence Show only first row Show all	>Lus10023806 pacid=23151474 polypeptide=Lus10023806 locus=Lus10023806.g ID=Lus10023806.BGIv1.0 annot-version=v1.0 MELLDDDFQVTFTAKNIVKAATVTTLKKQHETLPLSNLDLLSGRFPVTYLYIYANLQSNDLPTILSSLRLSLAKTLHYYYPFSGRIVTNPATSEPEIICN DQGVVFVEARANIPLKRVNFYDLNKLVIQGKLVCLSPDIPFQVQVTGYTCGGVSMTFTFDHALGDAASFSKFLLSWSEISQHKPLSCVPEHNRRSLLRPR NPPTYSPTIDRTFVKCTIDDILNMPTPMSTMVKRLYHIEAGCINRLQELASPNRTKVEALSAYIWKLMGKSIDGSKYKECKMGWLVDGRGRIGGRLKGNS MSNYIGNVLSVAIGEANVDELEVDSLAKVAGKVHDAISEATREEHFLEVMDWIECHRPGLMMARIVLGGGGGPAVVVSSGRRFPVGELEFGFGRPVLGTV SSTIEKIGVGYFNQRESGKNDGSWTVSAILWPQLVEALESDSVFQPISPAQHFLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	0	1
AT2G37900			Major facilitator superfamily ...		Lus10012663 [exp]	1.7	0.9697
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	2.2	0.9768
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	2.8	0.9717
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	4.5	0.9695
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	4.6	0.9618
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	6.9	0.9611
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	6.9	0.9457
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	8.1	0.9642
AT1G49000			unknown protein		Lus10032453 [exp]	8.1	0.9311
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	8.4	0.9644

Compare expression of checked genes

Lus10023806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.