Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19140 213 / 8e-68 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103000 [exp] 300 / 1e-101 AT4G19140 226 / 2e-72 unknown protein Potri.001G130900 [exp] 296 / 2e-100 AT4G19140 267 / 9e-89 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023813 pacid=23151454 polypeptide=Lus10023813 locus=Lus10023813.g ID=Lus10023813.BGIv1.0 annot-version=v1.0 ATGGTGGAATTATCTAACAAGAGCAGAAGAATCGTTTCATTTCTGCGTGGACTTCTGCGATTAGCTCTTGCCTTGCTTTTCCCCTTCTTTGCTTTCCTCA TCTTGTCGGTATCCATGGTCTTCGTCGCCCTTATATCCGGGCATTTTTCTTTCACATCACCAGAGATCTCTGTTCCTTCTCGGTGCCGGATAGTCTCCAG TGGTGTCGATCTCAGATCATCCAAAATTTGTGAACTGGGGTTGTTGAATCATAAGACAGTGAACGTCTTTCATCCTTTTGATAGAAACAAATTTCGATGT CGCTATGATTATTACTGGGCTTCAGTGTTTGAGGTGGAATATGAAGATCAGCCCTTGGGCCCAAGACGATATGCATTAGCAGAAGCTCCGAGTGAAGCCC TTCCTCAAAATTGTAGGCCTAATTTTGCTGCTGCATGGATGACAAAACATAAATTCAAGGTGAATCAAACATACAATTGCTGGCACGGAGCCGAGATTTC TAAAGTGAGCTTACACGGTGATGACATTTATCACTGCAATTTAAAAGAACCTTCTATCCTTGAGATGATGAATCGGTATCTTCAATTATCAAGTGACGCT CTAAGCTCATTGCTGATTCTGAAGAATGGAAAAGGCAGATACTGGAAGTTGGAAGTTATGGCTGGAGGTGTTACAGGATTCTTGGCTTCCTTGGTCAGTG TCATCTTCTTATCAGCAGTGATGCCACATATATACCTGGCATGGACGTGCATAGTGAGTGTTGTTACTCGGACAATGAAGCTGGCAGTTTTGAAGCGTGC TTGTTTTTTCGTGGCATACTTTTCCTTCATGGGTTGGTTGACTATCCAGTATGGGAAACGCCTTGGTCTGCCAGAGATCCAGGTAGGCTATCTTTGA
AA sequence Show only first row Show all	>Lus10023813 pacid=23151454 polypeptide=Lus10023813 locus=Lus10023813.g ID=Lus10023813.BGIv1.0 annot-version=v1.0 MVELSNKSRRIVSFLRGLLRLALALLFPFFAFLILSVSMVFVALISGHFSFTSPEISVPSRCRIVSSGVDLRSSKICELGLLNHKTVNVFHPFDRNKFRC RYDYYWASVFEVEYEDQPLGPRRYALAEAPSEALPQNCRPNFAAAWMTKHKFKVNQTYNCWHGAEISKVSLHGDDIYHCNLKEPSILEMMNRYLQLSSDA LSSLLILKNGKGRYWKLEVMAGGVTGFLASLVSVIFLSAVMPHIYLAWTCIVSVVTRTMKLAVLKRACFFVAYFSFMGWLTIQYGKRLGLPEIQVGYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19140			unknown protein		Lus10023813 [exp]	0	1
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	4.7	0.9247
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10001389 [exp]	10.2	0.8958
AT5G03460			unknown protein		Lus10023922 [exp]	10.6	0.8949
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	12.0	0.9043
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	14.3	0.8962
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	14.6	0.9102
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	14.8	0.9111
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10026327 [exp]	16.7	0.8518
AT3G55820			Fasciclin-like arabinogalactan...		Lus10028268 [exp]	17.0	0.8665
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	20.6	0.9074

Compare expression of checked genes

Lus10023813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.