Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19590 576 / 0 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 573 / 0 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 216 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G80670 184 / 6e-55 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 57 / 7e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 49 / 3e-06 MAC3B MOS4-associated complex 3B (.1.2.3) AT5G64730 48 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 47 / 9e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 45 / 7e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 45 / 8e-05 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003954 [exp] 662 / 0 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014343 [exp] 204 / 1e-62 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026051 [exp] 202 / 1e-62 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026095 [exp] 190 / 2e-57 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 191 / 3e-57 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 51 / 9e-07 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10029621 [exp] 45 / 8e-05 AT4G03020 658 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10018458 [exp] 44 / 0.0002 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 44 / 0.0002 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295100 [exp] 620 / 0 AT3G19590 593 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G089200 [exp] 608 / 0 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 215 / 3e-67 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 196 / 3e-60 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G180000 [exp] 171 / 4e-50 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G048100 [exp] 166 / 2e-48 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 59 / 2e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 52 / 2e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G114600 [exp] 43 / 0.0002 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.018G020200 [exp] 43 / 0.0002 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023814 pacid=23151477 polypeptide=Lus10023814 locus=Lus10023814.g ID=Lus10023814.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCCGTACCTCCGCCGGGATCGGGCCGCGAGCTCTCTAATCCCCCTACCGAGGGGATCTCCAATCTTCGGTTCTCCAACCTCAGTGACCACC TCCTCGTCTCCTCCTGGGACAAGAGCGTGAGGCTGTACGACGCCAGTGCCAATTCGTTGCTGGGCGAGTTCATGCACGGTGGAGCGGTGTTGGACTGCTG CTTCCACGATGAATCCTCTGGATTTAGTGCTAGCGCCGACAATCTTGTTCGAAGACTCGTGTTTAATCATGGGAAAGAAGATATCTTGGGGAAGCATGAT GCACCTGTTCGTTGTATAGAGTATTCGTATGCAGCAGGACAAGTAATTACTGGTAGCTGGGACAGAACAGTGAAGTGCTGGGATCCTAGGGGAGCAAGCG GACAAGATCGCACTCTTGTTGGTACATATCCACAGCCTGAAAGGGTCTATTCTCTATCTCTTGTTGGAAATCGTGTAGTGGTAGCCACAGCAGGAAGACA TGTCAATGTCTATGATTTGAGAAATATGTCTCAACCGGAACAGCAAAGGGAATCGTCGCTAAAATATCAAACAAGATGTGTCCGCTGCTACCCCAATGGC ACAGGTTATGCTCTTAGTTCTGTAGAAGGTCGGGTAGCTATGGAATTTTTTGATCTTTCCGAGGCAGCTCAAGCTAAAAAGTGGGTAGCCATTATTTCTG CTAATATCTTTAATTTCAGGTACGCATTTAAGTGCCACCGAAAATCAGAGGCTGGAAGAGACATCGTATATCCAGTGAATGCTATTGCATTTCATCCTGT TTACGGTACATTTGCAACTGGAGGCTGCGATGGCTTTGTGAACGTGTGGGATGGTAACAACAAAAAAAGGCTGTATCAGTACTCTAAGTACCCGTCAAGC ATAGCGGCACTTTCTTTCAGCAAAGATGGCCGCTTGTTAGCTGTGGCATCTAGTTACACATATGAAGAGGGAGAAAAACCGCACGAGCCAGATGCGATAT TTGTCCGCAGTGTGAATGAAGTTGAAGTGAAGCCAAAGCCGAAAGTGTATCCAAACCCACCCGCATGA
AA sequence Show only first row Show all	>Lus10023814 pacid=23151477 polypeptide=Lus10023814 locus=Lus10023814.g ID=Lus10023814.BGIv1.0 annot-version=v1.0 MAAAVPPPGSGRELSNPPTEGISNLRFSNLSDHLLVSSWDKSVRLYDASANSLLGEFMHGGAVLDCCFHDESSGFSASADNLVRRLVFNHGKEDILGKHD APVRCIEYSYAAGQVITGSWDRTVKCWDPRGASGQDRTLVGTYPQPERVYSLSLVGNRVVVATAGRHVNVYDLRNMSQPEQQRESSLKYQTRCVRCYPNG TGYALSSVEGRVAMEFFDLSEAAQAKKWVAIISANIFNFRYAFKCHRKSEAGRDIVYPVNAIAFHPVYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSS IAALSFSKDGRLLAVASSYTYEEGEKPHEPDAIFVRSVNEVEVKPKPKVYPNPPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	0	1
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	2.0	0.9355
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10009221 [exp]	4.2	0.8937
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10027665 [exp]	4.4	0.8922
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	6.0	0.9003
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	6.7	0.9222
AT5G03670			unknown protein		Lus10035565 [exp]	8.8	0.9059
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	9.2	0.9227
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	10.6	0.9168
AT5G01910			unknown protein		Lus10022734 [exp]	12.6	0.9088
AT4G29410			Ribosomal L28e protein family ...		Lus10012915 [exp]	12.6	0.9013

Compare expression of checked genes

Lus10023814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.