Plant FIBer expression Database

Lus10023815 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06790 66 / 1e-13 unknown protein
AT3G57950 64 / 2e-13 unknown protein
AT2G42180 48 / 2e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021036
[exp]
241 / 2e-82 AT3G57950 108 / 7e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G191100
[exp]
100 / 1e-26 AT5G06790 141 / 4e-42 unknown protein
Potri.016G047800
[exp]
96 / 3e-25 AT5G06790 137 / 1e-40 unknown protein
PFAM info
Representative CDS sequence
>Lus10023815 pacid=23160650 polypeptide=Lus10023815 locus=Lus10023815.g ID=Lus10023815.BGIv1.0 annot-version=v1.0
ATGAAGAGCATCAAAGCCCTAGTCCACACCTTGATCGTGGCACACCTCTGCCGCGCATTTCGAGCCCTCCGACGTGCGAAATCCATCCTCGTCCAAGCCC
TCAAGGACCACAACTTCCCCTTCTCACACTACCTCATCATCTACCCCAATGCATCAACCAAGTCCAAGAGAATCTATAACAAGAAGGTCTTCTTCGGCTC
CTTCCGGCTCCACTACAACTGGGGCTCCACGTCATCCTCCCACGTCACGCCTGTTCCCGAGTCCGTCCTACGTGGCGGCTTCGATGAGGTGGTGGAGGGT
CTTCCCGGGTACCTTCTCTGGCTAGAGGAGAGAGATCGCGAGAAGAGTTATAAGGTGAGTGGTGGCGAGGATGACGTAGCGAATGAGATTGACAGGCTGG
CGGAGATGAGCTCGCGTTGCGCCGCCCCCCGCGCAACGAGAAGTTCCAGCTGGAGAAGCAGGAGTCCATGA
AA sequence
>Lus10023815 pacid=23160650 polypeptide=Lus10023815 locus=Lus10023815.g ID=Lus10023815.BGIv1.0 annot-version=v1.0
MKSIKALVHTLIVAHLCRAFRALRRAKSILVQALKDHNFPFSHYLIIYPNASTKSKRIYNKKVFFGSFRLHYNWGSTSSSHVTPVPESVLRGGFDEVVEG
LPGYLLWLEERDREKSYKVSGGEDDVANEIDRLAEMSSRCAAPRATRSSSWRSRSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G06790 unknown protein Lus10023815
[exp]
0 1
AT2G38620 CDKB1;2 cyclin-dependent kinase B1;2 (... Lus10035614
[exp]
6.5 0.8448
AT3G22680 RDM1 RNA-DIRECTED DNA METHYLATION 1... Lus10039354
[exp]
6.9 0.8587
AT1G66160 ATCMPG1 "CYS, MET, PRO, and GLY protei... Lus10004189
[exp]
9.5 0.6938
AT3G50870 GATA GATA18, HAN, MN... MONOPOLE, HANABA TANARU, GATA ... Lus10041746
[exp]
12.6 0.8223
AT4G37650 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM... Lus10011542
[exp]
13.0 0.7903
AT3G58690 Protein kinase superfamily pro... Lus10033606
[exp]
18.4 0.7793
AT5G58170 GDPDL7, SVL5 Glycerophosphodiester phosphod... Lus10019605
[exp]
23.2 0.7547
AT5G48385 FRIGIDA-like protein (.1) Lus10002146
[exp]
24.3 0.7557
AT2G28790 Pathogenesis-related thaumatin... Lus10004954
[exp]
27.0 0.7901
AT3G22520 unknown protein Lus10000233
[exp]
28.6 0.7822

Lus10023815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.