Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15010 187 / 9e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G41060 175 / 2e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G56860 171 / 6e-49 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G22090 115 / 5e-29 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 106 / 6e-25 RNA recognition motif (RRM)-containing protein (.1) AT5G47620 103 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G17640 101 / 7e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 98 / 7e-23 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT4G14300 97 / 4e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G22100 97 / 4e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021035 [exp] 665 / 0 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10025418 [exp] 188 / 5e-56 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 181 / 3e-53 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032516 [exp] 176 / 4e-51 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10043016 [exp] 174 / 1e-49 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10039054 [exp] 106 / 3e-25 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 104 / 9e-25 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038806 [exp] 103 / 6e-24 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10024937 [exp] 102 / 8e-24 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190900 [exp] 440 / 4e-155 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 430 / 3e-151 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 211 / 5e-65 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 204 / 2e-62 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 189 / 1e-55 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G220600 [exp] 184 / 8e-54 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.005G081600 [exp] 174 / 1e-50 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G025600 [exp] 171 / 6e-49 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.016G023800 [exp] 167 / 2e-47 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G015700 [exp] 107 / 2e-25 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10023817 pacid=23160671 polypeptide=Lus10023817 locus=Lus10023817.g ID=Lus10023817.BGIv1.0 annot-version=v1.0 ATGGTAGGTAACAATATCATCAGGTTCCCGGACCTCAGCTGCTTCACTGAACAAGCCTTCAGAACCGCCTTCTCGATTACCGAAGAACCCAAGTACTCGT CGCCGGACCGGGCATCATCATCCATGGAGGAAATGAAGAAGCGGAAGATGGACGAGGCCATTAACGGTGGCGAAGCGGCGAATCAGGAGCTCCTCCGCTC TCTCCTCGACCCTCTCAGCAAAACCCAGCTCATCGATCTTCTTTCCAGACTAGGGACCCAATATCCTTCAATTGCAGAAGAAATTAAAAGTCTAGCCAGT GCTGATCCGGTCCATCGAAAGCTTTTTGTTCGTGGCTTAGCCTGGACTACCACTTCAGATACCTTGTGTGCTGCATTTCGGATGCATGGCGAAATAGAAG AAGGGGCGGTGATCCATGACAAAGCAACGGGAAAGTCACGTGGTTATGGTTTTATTACATTCAAGCATATGGAATCAGCACAAAGTGCTCTGAAAGCACC TAGTAAACTGATTGATGGCCGGCTGGCTGTCTGTAATCTTGCTTGCGAGGGACTTAGTGGAGCAAGCAGTACCCCGGATCTAGCACAACGGAAACTGTAT ATTGGGGGTTTGTCCCCAGAGATCACAAGTGAGGCACTGCTTAAATATTTCGGAAGGCACGGGGAAATCGAAGAAGGTTCTGTTGCATATGATAAGGATA CTAACGAGTCACGTGGATTTGGCTTTGTCACATACAAGACACTGGAGGCTGCAAAGAAAGCCTTGAATGATCCTCAAAAGATACTCGGGGGTAGATCTCT CATTGTGAAGCTTGCAGATAGTAACAAGGGGAAAGCCGCCCAATTGCAGGGGGCCGCACCTCCACCTGTACTGCCAATGGTTCAAGGGCCCTTTCCGACC GGATATGCACAGCCAGGAAGACCTCACGCTGGATTTCTACCTGCTGGCTACGCTTACCCTCAAGCACTAGGATCATACCCTCCTCCGCCCTACCAAATGC AGCCACAGGTCCCATATCTGCAAGGTTCAGCGAGGAAAGACCCGTCAGGGATATCAATGCCAGCACCCGTGGTGATGACCGGGTATCCTTATTTCCATCC CAAGCAGGAGAGAGAGTAG
AA sequence Show only first row Show all	>Lus10023817 pacid=23160671 polypeptide=Lus10023817 locus=Lus10023817.g ID=Lus10023817.BGIv1.0 annot-version=v1.0 MVGNNIIRFPDLSCFTEQAFRTAFSITEEPKYSSPDRASSSMEEMKKRKMDEAINGGEAANQELLRSLLDPLSKTQLIDLLSRLGTQYPSIAEEIKSLAS ADPVHRKLFVRGLAWTTTSDTLCAAFRMHGEIEEGAVIHDKATGKSRGYGFITFKHMESAQSALKAPSKLIDGRLAVCNLACEGLSGASSTPDLAQRKLY IGGLSPEITSEALLKYFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTLEAAKKALNDPQKILGGRSLIVKLADSNKGKAAQLQGAAPPPVLPMVQGPFPT GYAQPGRPHAGFLPAGYAYPQALGSYPPPPYQMQPQVPYLQGSARKDPSGISMPAPVVMTGYPYFHPKQERE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	1.7	0.9481
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	2.8	0.9310
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	3.5	0.9386
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	5.5	0.9309
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	5.7	0.9377
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	6.8	0.9463
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	7.5	0.9213
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	7.7	0.9352
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10019147 [exp]	8.4	0.9369
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	8.7	0.9234

Compare expression of checked genes

Lus10023817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.