Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42200 149 / 2e-41 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 144 / 8e-40 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT5G43270 135 / 5e-36 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G02065 129 / 2e-34 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 130 / 4e-34 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 125 / 9e-33 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 125 / 9e-33 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27370 125 / 1e-32 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT2G33810 119 / 1e-32 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT3G15270 120 / 2e-32 SBP SPL5 squamosa promoter binding protein-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021034 [exp] 516 / 0 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10016275 [exp] 236 / 1e-75 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 233 / 2e-72 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10036812 [exp] 136 / 5e-36 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021614 [exp] 135 / 5e-36 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10000643 [exp] 135 / 4e-35 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 134 / 5e-35 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10006411 [exp] 128 / 2e-33 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10011356 [exp] 127 / 3e-33 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048500 [exp] 255 / 3e-82 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.003G172600 [exp] 139 / 6e-37 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.008G097900 [exp] 139 / 1e-36 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.018G149900 [exp] 137 / 2e-36 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G055900 [exp] 135 / 8e-36 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.002G142400 [exp] 131 / 1e-34 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.015G098900 [exp] 130 / 1e-34 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.014G057700 [exp] 129 / 1e-34 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.010G154300 [exp] 131 / 5e-34 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.012G100700 [exp] 128 / 6e-34 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10023818 pacid=23160770 polypeptide=Lus10023818 locus=Lus10023818.g ID=Lus10023818.BGIv1.0 annot-version=v1.0 ATGGACATTGGTGGTGGTGGGTATTTCCCAAACTCTGATTCTTCTCCACCAACTTCCTCTTCCTCATCTTCTGCAGCTGACTCCAACAATGGGTTGAAGT TTGGGAAGAAGATCTACTTTTGTGACCATGTGGGTCTTCTTAATTCCACCCCTCCTAATCCTAAGCCTGCTGGCTCTTCTTCGAGGAAGGTGGCTAATCA GCAGCAGCTACAAACTCCAAGGTGTCAAGTTGAAGGGTGCAATGTGGATCTGAGCGATGTTAAGCCTTACTACTCCAGGCACAAAGTCTGTGGGATTCAC TCCAAGACTCCTACTGTCATTGTTGCTGGCTCGGAACAGAGGTTTTGCCAACAGTGCAGCAGGTTTCATCTGCTACCTGAATTTGACCAAGGAAAGAGGA GCTGCCGCAGGCGGCTAGCTGGCCATAATGAACGAAGGAGGAAGCCTCCACCAGGCTCGATGCTATCGTCTAGCTATGGCAGGCTCTCGTCCACTCTTTT CGAAAACAGCGGCAGAGGTAATGGTGGTGGTGGTGGCGGCGGTGGCGGTTTTCTTCTTGACTTCACCTCATTCCCAAGGTCATCCGGGAGGGAAGCTAAT AATGATGAAACTCATTTCAATTTGTGGCAGAACAGCAGCTCTCAGAACCCTCCTCCGCCGAACATCTACACGCAAGTTTCGACAGGATTCTCGATCCACC CTGGAGAATGTTACAGCATCGCTGATTCGAGCTGTGCTCTCTCTCTTCTGTCAAATGAACAACAATGGAGCTCCTCTAGAAGCAGGCCATCAAGTCATAC AGCTGTAGGCAACTTGGTGGACTCGGAGGCTCCTCCCGTTGCAACTCTATCCACTGCTGCTGCAACAACCATCAGCCCTTACCAGAACACTTGGGGCTTT AAAGGAGGTGGCACTAATGCATTTGGCAGTTCGCATGGGATGCTGCAATCAGATCTCGGTCTCGGTCAGATTCAGCCACATTCAGCCACTGGCTCGGAGC TTGACATGTCGCTGCTCTCGAGGAGGCAGTATATGGAATTGGAGGAGAATTCCAGACCATATGGCTCGTCCGATCAGCATATCAACTGGTCTCTCTAG
AA sequence Show only first row Show all	>Lus10023818 pacid=23160770 polypeptide=Lus10023818 locus=Lus10023818.g ID=Lus10023818.BGIv1.0 annot-version=v1.0 MDIGGGGYFPNSDSSPPTSSSSSSAADSNNGLKFGKKIYFCDHVGLLNSTPPNPKPAGSSSRKVANQQQLQTPRCQVEGCNVDLSDVKPYYSRHKVCGIH SKTPTVIVAGSEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPPPGSMLSSSYGRLSSTLFENSGRGNGGGGGGGGGFLLDFTSFPRSSGREAN NDETHFNLWQNSSSQNPPPPNIYTQVSTGFSIHPGECYSIADSSCALSLLSNEQQWSSSRSRPSSHTAVGNLVDSEAPPVATLSTAAATTISPYQNTWGF KGGGTNAFGSSHGMLQSDLGLGQIQPHSATGSELDMSLLSRRQYMELEENSRPYGSSDQHINWSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	0	1
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	2.4	0.9348
AT2G46980			unknown protein		Lus10038019 [exp]	2.6	0.9421
AT3G54750			unknown protein		Lus10029345 [exp]	4.9	0.9290
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10016275 [exp]	4.9	0.9244
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	5.5	0.9275
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020382 [exp]	10.5	0.8714
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	10.9	0.9352
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10021034 [exp]	12.7	0.8970
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Lus10030371 [exp]	16.5	0.9166
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	16.9	0.9000

Compare expression of checked genes

Lus10023818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.