Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57910 212 / 6e-68 D111/G-patch domain-containing protein (.1) AT5G26610 47 / 6e-06 D111/G-patch domain-containing protein (.1.2.3) AT3G54230 44 / 8e-05 SUA suppressor of abi3-5 (.1.2) AT5G08535 39 / 0.0008 D111/G-patch domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021033 [exp] 391 / 6e-138 AT3G57910 269 / 4e-90 D111/G-patch domain-containing protein (.1) Lus10031446 [exp] 47 / 5e-06 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10010955 [exp] 47 / 2e-05 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10001513 [exp] 46 / 2e-05 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10031369 [exp] 45 / 4e-05 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048600 [exp] 243 / 8e-80 AT3G57910 215 / 1e-69 D111/G-patch domain-containing protein (.1) Potri.005G002700 [exp] 46 / 1e-05 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G002100 [exp] 45 / 2e-05 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.008G003100 [exp] 44 / 2e-05 AT5G08535 107 / 5e-31 D111/G-patch domain-containing protein (.1.2) Potri.004G081800 [exp] 45 / 7e-05 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Lus10023819 pacid=23160681 polypeptide=Lus10023819 locus=Lus10023819.g ID=Lus10023819.BGIv1.0 annot-version=v1.0 ATGGCGGAATCACCCGAAAACAGAACCGCCGGCCTGGGATCCGCCGGGAGACGAGATGATGAAGAGGAAGAAGAAGATTACATGGGAGACCTTTCTCAGT TTCTGCTTCCGGAGACATCGGTCCCGTCCAATCCCAAGCTCTTAAGCAAAAAGATTGCTAATAACAAGACGCAAGCAGTGCAATCGTCGAAGAAGAAGAA GGCTGTAAGTTGGCACGAGCAACGCAGGCTTGAGAAGGAAAGACAGCAAAAAGAGGAGGATGAGCAAACGCTGGCTAGAATTGAAGCTCCGATTCCGCAG TCTAACATTGGGTTTAAGCTGTTGAAGCAAATGGGATACACTCCTGGTTCGGCACTTGGTAAAGAGGGTTCAGGGAGAGCTGAGCCTGTGGGGATTGAGA TAAGGCGGACTAGAGTAGGGATTGGGAGGGAAGATCCGCATAAGGAGAAGAGGAAAAGAGAAGAGTTTGAGGCTGAATGGAAGAAGAGGAACGACGAGGC GATGATGGCTGACTTTGGTTCGAGGCAGAAGTTGCAATGGCGGAGTAAGAGAGTGGTTGTGAATTTTACGAAGGCGAAGGCTGCTCTTGATCAGTTGGAG AATAAAGAGTTTGTTGATGAACCTAAGAAGAGTGAGGATGAGGAAGAAGGTGAACAGGAAGAGGAAGAGGAAGAAGTTGTGACAGAAGAGGATCTGCACG AGATATTGATGAAACTTAGAGACGAACATCAGTACTGCTTATTTTGTGGATTTCAGTTGGTTACTACTCAGTTGCATCCGATACCTGATTGTTTAGTGCT TGGACTTGTTACTATGTTTCAGTATGAGACAGCCGAAGCACTTTTATCCAATTGCCCTGGAATCGACGAAGACGACCACTAA
AA sequence Show only first row Show all	>Lus10023819 pacid=23160681 polypeptide=Lus10023819 locus=Lus10023819.g ID=Lus10023819.BGIv1.0 annot-version=v1.0 MAESPENRTAGLGSAGRRDDEEEEEDYMGDLSQFLLPETSVPSNPKLLSKKIANNKTQAVQSSKKKKAVSWHEQRRLEKERQQKEEDEQTLARIEAPIPQ SNIGFKLLKQMGYTPGSALGKEGSGRAEPVGIEIRRTRVGIGREDPHKEKRKREEFEAEWKKRNDEAMMADFGSRQKLQWRSKRVVVNFTKAKAALDQLE NKEFVDEPKKSEDEEEGEQEEEEEEVVTEEDLHEILMKLRDEHQYCLFCGFQLVTTQLHPIPDCLVLGLVTMFQYETAEALLSNCPGIDEDDH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57910			D111/G-patch domain-containing...		Lus10023819 [exp]	0	1
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	2.0	0.8209
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	2.8	0.7947
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	10.2	0.7290
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	10.4	0.7679
AT5G14680			Adenine nucleotide alpha hydro...		Lus10032142 [exp]	11.5	0.7414
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	17.9	0.7429
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	20.8	0.7472
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	24.2	0.7041
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	27.7	0.7277
AT5G18400			Cytokine-induced anti-apoptosi...		Lus10010213 [exp]	31.8	0.7241

Compare expression of checked genes

Lus10023819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.