Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42220 303 / 9e-105 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT3G08920 110 / 1e-29 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G24750 81 / 4e-18 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G27700 56 / 3e-09 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66170 46 / 3e-06 STR18 sulfurtransferase 18 (.1.2.3) AT5G66040 45 / 3e-06 STR16 sulfurtransferase protein 16 (.1.2) AT2G17850 46 / 4e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G35770 40 / 0.0006 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) AT2G21045 39 / 0.0009 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021032 [exp] 467 / 2e-169 AT2G42220 304 / 2e-105 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10004811 [exp] 93 / 7e-23 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10002485 [exp] 92 / 1e-22 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10019454 [exp] 86 / 9e-20 AT4G24750 390 / 2e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10043306 [exp] 86 / 9e-20 AT4G24750 389 / 3e-137 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10012566 [exp] 54 / 5e-09 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10005635 [exp] 54 / 1e-08 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10023243 [exp] 50 / 3e-07 AT4G27700 305 / 7e-106 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10028390 [exp] 46 / 4e-06 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059200 [exp] 354 / 4e-125 AT2G42220 318 / 4e-111 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.006G100600 [exp] 96 / 8e-24 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G086100 [exp] 85 / 3e-19 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G111200 [exp] 53 / 1e-08 AT2G17850 162 / 5e-52 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.014G131300 [exp] 47 / 7e-07 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.012G020700 [exp] 45 / 1e-05 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 45 / 1e-05 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G106400 [exp] 45 / 2e-05 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10023820 pacid=23160827 polypeptide=Lus10023820 locus=Lus10023820.g ID=Lus10023820.BGIv1.0 annot-version=v1.0 ATGGCTGGTGTTACTGCTTCTTGTTCCACTCTTTCATCCAGAAGCAATTTTGCGGCATCTCGGTTGGAATTCCAGGCTCATGGAGATCATCACCACGGAA GAAGAACCCGATGGAGACAGACTCCTCAATGTGTAAAGGCGTTTGGGATAAGAGCTGAGGTGAATTATGTGAAGGCGGACGAAGCCAAAAAGCTGATAGC AGAAGACGGATATGCAGTGGTTGACGTGAGGGACGTGAGACAGTTCGAGCGAGCGCATATCAAATCGTGCTACCATGTTCCTCTCTTCATAGAAAACAAA GACAACGACATTGGGACCATCATTAATAGGCAACTGCACAACAACTTCTCCGGGTTGTTCTACGGGCTGCCTTTCACTAAGCCTAACCCTGAGTTCGTAG AGTCGGTGAAGAGCAAGTTCTCGCCCGAAAGCAAACTGTTGGTGGTGTGCCAGGAAGGACTGAGGTCTGCCGCGGCAGCTGACAAGCTAGAGAAAGCCGG TTTCCAGAACATTGCATGCATAACATCTGGTCTCCAATCTGTTAAACCAGGTACATTTGATTCCGAAGGCAAAACCGAGTTACAAGATGCTGGCAAAGCC GGTTTGGTCACAGTTCAAGGCAAGATCTCCGCTGTCGTTGGAACCATTCTCGTTTGCGCACTTCTATTCATTACGATCTTTCCCGATCAAGCGGAGCAGC TGTTAGCACTCGTACCATCTAGCTAG
AA sequence Show only first row Show all	>Lus10023820 pacid=23160827 polypeptide=Lus10023820 locus=Lus10023820.g ID=Lus10023820.BGIv1.0 annot-version=v1.0 MAGVTASCSTLSSRSNFAASRLEFQAHGDHHHGRRTRWRQTPQCVKAFGIRAEVNYVKADEAKKLIAEDGYAVVDVRDVRQFERAHIKSCYHVPLFIENK DNDIGTIINRQLHNNFSGLFYGLPFTKPNPEFVESVKSKFSPESKLLVVCQEGLRSAAAADKLEKAGFQNIACITSGLQSVKPGTFDSEGKTELQDAGKA GLVTVQGKISAVVGTILVCALLFITIFPDQAEQLLALVPSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42220			Rhodanese/Cell cycle control p...		Lus10023820 [exp]	0	1
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	2.0	0.9818
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	2.6	0.9822
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	4.0	0.9766
AT1G67700			unknown protein		Lus10011383 [exp]	4.2	0.9743
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	4.5	0.9765
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	4.9	0.9774
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10004054 [exp]	5.5	0.9736
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	6.0	0.9762
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	8.4	0.9748
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	8.5	0.9746

Compare expression of checked genes

Lus10023820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.