Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06839 397 / 3e-135 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G08320 330 / 8e-110 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06950 314 / 4e-104 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 312 / 1e-103 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 310 / 2e-102 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 305 / 6e-99 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G10030 283 / 2e-91 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 280 / 2e-90 bZIP bZIP transcription factor family protein (.1) AT1G22070 277 / 8e-89 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G65210 270 / 2e-87 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035499 [exp] 412 / 3e-142 AT5G06839 377 / 1e-129 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10024140 [exp] 344 / 1e-115 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 342 / 4e-115 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 339 / 6e-114 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10004876 [exp] 333 / 2e-108 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 332 / 2e-108 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 320 / 7e-105 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 321 / 9e-105 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10041475 [exp] 301 / 6e-97 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058800 [exp] 481 / 6e-167 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 469 / 1e-162 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G039000 [exp] 346 / 1e-114 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 343 / 8e-114 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 343 / 2e-113 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 338 / 5e-112 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.001G029800 [exp] 337 / 4e-111 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.004G203400 [exp] 334 / 1e-109 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 333 / 4e-109 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 287 / 3e-93 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10023822 pacid=23160834 polypeptide=Lus10023822 locus=Lus10023822.g ID=Lus10023822.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTAACAAAGTTATGGAACAACAACAGCAGCAGCAACAGCAAAATTACGAATTCCAACAGCAGCAAGACGTAGGAGGAGGAGGAGCGTATG ATTTGGGGGAATTGGATCAAGCGCTGTTGATGTATCTAGATGGCCAACAACAACAACAACAGCAACATGATCCAACTGTTCCTATTCTTCCACATCATAA TCAACAAGGAGGTATTATGAGCAGCAGCAGTACTAGTTCCAGTACCAGGCCACCTCCAACTCTTAACATCTTCCCTTCCCACCCTATGTACACCAAGATC AATAATGGTACTAGTACCGGCTCTCCGCCACCTCATCATCATCATGGAGTAGGTGTCTCCTCCGTCATCGCCGTCACGTCCACCCCTACCGGTCCCAAGA GACCGTCCTCCTCCTCCTCCTCCCCCTCGCCGTCAACTTATCCCGCCGCCGCTGCTCGGCCTTCCACATCCCAACCCGCACCAAAATCTATCAAGGTGAC CCCATCTCAGCATCAAGGTCCCAAGACGCCTGACCCTAAGGTTTCGGTTGTGTTGTCTGGATCAATGATATTGTTGGGTTTTCGTGCTCATCCCCAGACA TTGAGGCGACTTGCTCAGAATAGAGAAGCAGCCAGGAAAAGCAGGCTGCGCAAAAAGGCTTATGTTCAGCAACTGGAGTCAAGTAGAATCAAGCTTTCTC AGCTCGAGCAAGAGCTCCATAGAGCTCGATCTCAGGGAATGTTTTTGGGTGGAGGAGGAGGGATTTTCGGTGGAGACCAAAATCTGCCCCTCGTCAGCAA TATCAGCACTGATGCGGCGATGTTTGACATGGAGTACGGGAGGTGGCTGGAGGAACACCACCGGCTGACGTGCGAGCTGAGGGCGGCGGTGGACGAGCAC CTGCCGGAGAACGAGCTGAGGATGTACGTGGACAACTGCTTGGCTCACTACGACGTCGTTTTGAACCTCAAGGGGATGGTGGCGAAGTCCGACGTCTTCC ACTTAGTCTCCGGCGTGTGGAAGTCCCCCGCCGAGCGTTGCTTCATGTGGATCGGCGGCTTCCGCCCTTCCGAACTCATCAAGATAATAGCGAACCAGAT AGAGCCGTTGACGGAGCAGCAGATACTGGGGATATGCGGGATGCAGCAGTCGACGCAGGAAGCCGAGGAAGCGCTGTCGCAAGGCGTGGAAGCGCTGAAC CAGTCGTTGTCGGAGACGATTGCGGCGGACTCGTTGAGCTGCCAACCGAACATGGCTAACTACATGGGGCAGATGGCCATGGCCATCAACAAGCTCTCCA CCTTCGAAGCCTTTGTCCGACAGGCAGACAATCTGAGGCACCAAACTTTACACCAGCTGCATCAGATACTGACGACAAGGCAAGCTGCTCGGTGCTTTCT GGCCATCGCGGAATACTTTCATCGACTCCGAGCTCTGAGCTCCCTCTGGTTGTCTCGCCCCAGACAAGATTGA
AA sequence Show only first row Show all	>Lus10023822 pacid=23160834 polypeptide=Lus10023822 locus=Lus10023822.g ID=Lus10023822.BGIv1.0 annot-version=v1.0 MAAANKVMEQQQQQQQQNYEFQQQQDVGGGGAYDLGELDQALLMYLDGQQQQQQQHDPTVPILPHHNQQGGIMSSSSTSSSTRPPPTLNIFPSHPMYTKI NNGTSTGSPPPHHHHGVGVSSVIAVTSTPTGPKRPSSSSSSPSPSTYPAAAARPSTSQPAPKSIKVTPSQHQGPKTPDPKVSVVLSGSMILLGFRAHPQT LRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELHRARSQGMFLGGGGGIFGGDQNLPLVSNISTDAAMFDMEYGRWLEEHHRLTCELRAAVDEH LPENELRMYVDNCLAHYDVVLNLKGMVAKSDVFHLVSGVWKSPAERCFMWIGGFRPSELIKIIANQIEPLTEQQILGICGMQQSTQEAEEALSQGVEALN QSLSETIAADSLSCQPNMANYMGQMAMAINKLSTFEAFVRQADNLRHQTLHQLHQILTTRQAARCFLAIAEYFHRLRALSSLWLSRPRQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	0	1
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	3.2	0.9647
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	3.5	0.9640
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10042040 [exp]	4.9	0.9552
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	5.2	0.9596
AT1G13520			Protein of unknown function (D...		Lus10035080 [exp]	5.7	0.9588
AT2G14830			Regulator of Vps4 activity in ...		Lus10033703 [exp]	6.7	0.9544
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	6.8	0.9450
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	7.5	0.9559
					Lus10022098 [exp]	7.8	0.9316
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	8.1	0.9572

Compare expression of checked genes

Lus10023822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.