Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06850 1326 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1204 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1125 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1115 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1107 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 1071 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 1000 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 919 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 870 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 868 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021030 [exp] 1565 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1142 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1137 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1062 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1033 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 986 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 867 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10037479 [exp] 859 / 0 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 791 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049300 [exp] 1382 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 1360 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1297 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 1277 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1149 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1144 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1114 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1110 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1102 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1083 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10023823 pacid=23160792 polypeptide=Lus10023823 locus=Lus10023823.g ID=Lus10023823.BGIv1.0 annot-version=v1.0 ATGAAGCCAGGAGCGCCGGATACTCAAAAGGAGGACTTCAAGCTGAAGGACACCAAGCCGCAGCTTGGAGAGAGATGGCCCCATGGAGGTTCGCGAGGTG GGGGAGGGTGGATTAGCAGTGAAAGAGCCACAAGCACATATGATCTGGTGGAGCAGATGTTTTATCTCTATGTTCGGGTTGTGAAAGCTCGTGACCTTCC TCCGAACCCTGTATCTGGAAGCTGTGACCCTTATGTAGAAGTCAAGCTGGGGAACTACAAGGGGAAAACTCAGCACTTCGAGAAGAAAACCAACCCGGAA TGGAACCAAGTTTTTGCATTCTCCAAGGAAAAGCTTCAGTCTTCTGTCCTTGAAGTTTATGTCAGAGACAGGGAAATGGTGGGGAGGGATGATTATGCAG GGAAAGTGATCTTTGATATGCATGAAGTCCCCACCAGAGTCCCTCCGGATAGTCCCTTGGCTCCTCAATGGTACCGGTTGGAAGATCGCAGGGGCGAGAC CAAGGTGAAAGGAGAGGTGATGCTTGCTGTCTGGATGGGAACACAAGCGGATGAAGCTTTTCCAGATTCATGGCACTCTGACGCTGCCTCGGTCCACGGA GAAGGTGTGTTCAGTGTGAGATCAAAGGTTTATGTCTCACCGAAACTTTGGTACATCAGAGTTAACATCATTGAAGCACAGGATGTCGAGCCACACGACA AAACACAGCAGCCGCAGGTGTTTGTGAAGGCTCAAGTTGGGCATCAAGTGCTCAAGACAAAGCTGTGCCCAACCAAGACCCCGAACCCGGTATGGAACGA GGATCTGATATTCGTAGCAGCCGAGCCGTTTGAAGAACAGCTGGTGCTGACACTGGAGAACCGTGTAGCCCCTTCGAAAGATGAAATCGTGGGGCGGATT GTTCTTCCGCTACATATCTTCGAAAGGCGCCTCGACCACCACCGCTCGATTCATTCCAAATGGTTCAACATGGAGAAGTTTGGGTTCGGAGTCCTGGAAG CTGACAAGAGGCACGAACATAAATTCTCCAGCAGGATACATTTGAGAGTCTGCCTGGAAGGTGGGTATCATGTGCTGGATGAATCAACTATGTACATAAG CGACCAGCGGCCTACTTCCAGGCAGCTCTGGAAGCAGCCGATCGGACTGCTGGAAGTCGGAATCCTGAGTGCACAAGGACTTCAACCTATGAAGAAAAAC GACAGAGGAGGATCGACAGATGCATACTGTGTAGCCAAGTACGGTCTCAAGTGGGTGAGAACTAGAACCATTGTCGAAAGCTTTAATCCGAAATGGAATG AGCAATACACCTGGGAGGTTTATGATCCTTGCACGGTGATCACACTCGGAGTATTCGACAACTGCCATTTGGGAGGAGGTGGCGATGGAGGTAGTAAGAA TGATACTAAAATCGGGAAGGTGAGGATCCGACTGTCTACTCTCGAAACGGATCGTATCTACACAAACTCGTACCCTCTCCTCGTTCTGCAACCATCTGGG CTGAAGAAGATGGGAGAGCTCCAGCTTGCAGTCCGGTTCACTTGCCTATCTTTAGCCCATATGATATATCTTTATGGCCATCCTTTGCTTCCAAAGATGC ACTACCTGCATCCTTTCACGGTGAACCAGCTCGACAGCTTGCGATACCAAGCCATGAGGATTGTGGCAACTAGGCTAGGGAGAGCCGAGCCGCCACTGAG GAAAGAGGTGGTGGAGTATATGCTGGATGTGGATTCACATATGTGGAGCATGAGGAGAAGCAAAGCAAACTTCTTCCGAATCGTCTCCCTCTTCTCTGGT GTCATATCAATCAGCAAATGGCTCGGCGAAGTCTGTCAATGGAAGAACCCTGTCACCACAATCTTGGTTCATGTGCTCTTGTTCATCCTGATATGCTACC CGGAGCTCATTCTCCCCACCATATTCTTGTACATGTTCTTGATCGGGCTGTGGAACTTCCGGTTCCGACCAAGGCACCCTCCCCACATGGACACCAAGCT GTCATGGGCGGAGGGGGTTAACCCGGACGAGCTTGATGAAGAGTTCGACACTTTCCCTCCCTCCAAGGCGCAAGATGTCGTGAGGATGAGGTACGACAGG CTGAGGAGCGTTGCGGGGAGGATCCAGACGGTGGTTGGAGACATAGCAACACAAGGGGAGAGGTTTCACGCTCTGCTCAGCTGGAGGGATCCTCGAGCCA CGAGTCTGTTCGTGATGTTCTGCTTCGTTACTGCTGTGGCGCTCTACGTAACCCCATTCAAGATAGTTGCTTTGGTTGCAGGGTTATTTTGGCTGCGACA TCCCAAGTTCCGCAGCAAGTTGCCTTCAGTTCCAAGCAATTTCTTCAGAAGGCTTCCATCCAGAGCTGATAGCCTGCTGTGA
AA sequence Show only first row Show all	>Lus10023823 pacid=23160792 polypeptide=Lus10023823 locus=Lus10023823.g ID=Lus10023823.BGIv1.0 annot-version=v1.0 MKPGAPDTQKEDFKLKDTKPQLGERWPHGGSRGGGGWISSERATSTYDLVEQMFYLYVRVVKARDLPPNPVSGSCDPYVEVKLGNYKGKTQHFEKKTNPE WNQVFAFSKEKLQSSVLEVYVRDREMVGRDDYAGKVIFDMHEVPTRVPPDSPLAPQWYRLEDRRGETKVKGEVMLAVWMGTQADEAFPDSWHSDAASVHG EGVFSVRSKVYVSPKLWYIRVNIIEAQDVEPHDKTQQPQVFVKAQVGHQVLKTKLCPTKTPNPVWNEDLIFVAAEPFEEQLVLTLENRVAPSKDEIVGRI VLPLHIFERRLDHHRSIHSKWFNMEKFGFGVLEADKRHEHKFSSRIHLRVCLEGGYHVLDESTMYISDQRPTSRQLWKQPIGLLEVGILSAQGLQPMKKN DRGGSTDAYCVAKYGLKWVRTRTIVESFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGGDGGSKNDTKIGKVRIRLSTLETDRIYTNSYPLLVLQPSG LKKMGELQLAVRFTCLSLAHMIYLYGHPLLPKMHYLHPFTVNQLDSLRYQAMRIVATRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSG VISISKWLGEVCQWKNPVTTILVHVLLFILICYPELILPTIFLYMFLIGLWNFRFRPRHPPHMDTKLSWAEGVNPDELDEEFDTFPPSKAQDVVRMRYDR LRSVAGRIQTVVGDIATQGERFHALLSWRDPRATSLFVMFCFVTAVALYVTPFKIVALVAGLFWLRHPKFRSKLPSVPSNFFRRLPSRADSLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	0	1
AT5G06850			C2 calcium/lipid-binding plant...		Lus10021030 [exp]	1.0	0.9775
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	1.4	0.9687
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	2.4	0.9234
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	3.7	0.9151
AT4G16790			hydroxyproline-rich glycoprote...		Lus10004758 [exp]	3.9	0.9216
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	8.2	0.9223
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	9.5	0.8892
					Lus10018997 [exp]	9.8	0.9155
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	11.7	0.9105
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	11.8	0.8546

Compare expression of checked genes

Lus10023823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.