Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06860 366 / 7e-127 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT5G06870 336 / 4e-115 PGIP2, ATPGIP2 ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, polygalacturonase inhibiting protein 2 (.1) AT3G12145 301 / 3e-101 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT3G12610 194 / 3e-59 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G20820 157 / 9e-45 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 155 / 4e-44 Leucine-rich repeat (LRR) family protein (.1) AT1G35710 134 / 1e-34 Protein kinase family protein with leucine-rich repeat domain (.1) AT2G26380 130 / 7e-34 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 125 / 4e-32 Leucine-rich repeat (LRR) family protein (.1) AT5G44700 124 / 4e-31 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021028 [exp] 605 / 0 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10021029 [exp] 590 / 0 AT5G06860 325 / 4e-111 polygalacturonase inhibiting protein 1 (.1) Lus10023825 [exp] 187 / 1e-57 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10031824 [exp] 178 / 9e-53 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 171 / 2e-50 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 166 / 4e-48 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 157 / 5e-45 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 155 / 3e-44 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 138 / 2e-38 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058600 [exp] 425 / 4e-150 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.016G049400 [exp] 410 / 4e-144 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1) Potri.016G049600 [exp] 374 / 5e-130 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.006G058500 [exp] 246 / 1e-80 AT5G06860 258 / 2e-85 polygalacturonase inhibiting protein 1 (.1) Potri.009G064300 [exp] 172 / 7e-51 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 162 / 8e-47 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 156 / 1e-44 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 151 / 1e-42 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 132 / 3e-34 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G001000 [exp] 130 / 9e-34 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023824 pacid=23160689 polypeptide=Lus10023824 locus=Lus10023824.g ID=Lus10023824.BGIv1.0 annot-version=v1.0 ATGAGAGGAATCGGAATCGGAATCCTTACCTTCAGCCGGCTCTTCCTCGCCGCCGCACTACTTCCGATCACCTTCTCCAAAACCGAACGCTGCAACCCAA AAGACAAAGCAGCGCTCTTCAACATCAAGGAAAGCTTTGGCAACCCTTACCTCTTAGCCTCCTGGACTCACGACTCCGATTGCTGCACCAGCTGGTACCA AGTCGAATGCGACCCCACCACCAACCGGATCACTTCCCTCACCATCTTCGCCGGCGAACTCTCCGGCCAGATCCCTCCAGCTGTGGGGGACCTCCCTTTC CTCGAAAAGCTCATCTTCCGTAAGCTCACCAACGTCACCGGCCCAGTCCAGCCGGCGATCGCCAAACTCAAACGGCTCAGCTTCCTCCGGCTCGACCATT TGAACCTAACCGGTTCGGTCCCCGGCTGGCTCGGCCAGCTAAAAAACCTGACGTTTCTCGACCTTTCGTTCAACCAGCTCACCGGATCGATCCCGGCGGA ACTCGCAAACTTACCCGTTCTCATCGCGCTCCACTTAGATCGGAACAAGCTCACAGGCCGGATCCCAGACTCGTTCGGTAAATTCTCGACTTCGCTGTAC CTCTCGCACAACCAGTTATCCGGCGAGATCCCGGCGTCGATGGCGGATTACAACACCGATTTCGAAATCGATCTGTCGAGGAACCGTTTGGAAGGCGACG CTTCCCCATTGTTCGGCGGTAACAAGAGCGTGCTGTTCGTGGATATATCGAGGAATCTGTTCGAGTTCGATTTCGGGAAAGTGGCTGCATTTCCTCCGAA CATGTCGAATTTGGATATGAATCACAACAAGATCTACGGGAAGATTCCGGCGGCTTTGGTGAACCAGGAACTGCAGCTTTTTAACGTCAGCTATAATCGG CTGTGTGGCGAGATTCCCACCGGCGGGAAGTTGCAGAGCTTCGATTCCACGGCTTATTTCCATAACCGGTGCCTGTGTGGAAGCCCGCTCGAGCCCTGCA AGTGA
AA sequence Show only first row Show all	>Lus10023824 pacid=23160689 polypeptide=Lus10023824 locus=Lus10023824.g ID=Lus10023824.BGIv1.0 annot-version=v1.0 MRGIGIGILTFSRLFLAAALLPITFSKTERCNPKDKAALFNIKESFGNPYLLASWTHDSDCCTSWYQVECDPTTNRITSLTIFAGELSGQIPPAVGDLPF LEKLIFRKLTNVTGPVQPAIAKLKRLSFLRLDHLNLTGSVPGWLGQLKNLTFLDLSFNQLTGSIPAELANLPVLIALHLDRNKLTGRIPDSFGKFSTSLY LSHNQLSGEIPASMADYNTDFEIDLSRNRLEGDASPLFGGNKSVLFVDISRNLFEFDFGKVAAFPPNMSNLDMNHNKIYGKIPAALVNQELQLFNVSYNR LCGEIPTGGKLQSFDSTAYFHNRCLCGSPLEPCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10023824 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	2.0	0.9916
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	2.2	0.9883
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	2.4	0.9908
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	2.8	0.9913
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	3.3	0.9835
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	4.0	0.9890
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	6.3	0.9852
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	7.7	0.9842
AT3G09220		LAC7	laccase 7 (.1)		Lus10027747 [exp]	7.7	0.9829
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	9.0	0.9845

Compare expression of checked genes

Lus10023824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.