Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15930 166 / 2e-52 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT2G32060 164 / 9e-52 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT5G06860 130 / 3e-36 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT5G06870 121 / 7e-33 PGIP2, ATPGIP2 ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, polygalacturonase inhibiting protein 2 (.1) AT3G12145 111 / 5e-29 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT1G33590 64 / 1e-11 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 63 / 3e-11 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 63 / 3e-11 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 62 / 5e-11 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT1G33670 62 / 6e-11 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021027 [exp] 213 / 6e-71 AT2G32060 192 / 4e-64 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10021028 [exp] 207 / 6e-66 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10027800 [exp] 196 / 5e-64 AT2G32060 197 / 3e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10023824 [exp] 186 / 8e-58 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10021029 [exp] 184 / 4e-57 AT5G06860 325 / 4e-111 polygalacturonase inhibiting protein 1 (.1) Lus10035501 [exp] 184 / 2e-55 AT3G12150 333 / 3e-111 unknown protein Lus10042239 [exp] 66 / 5e-12 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10001034 [exp] 65 / 6e-12 AT2G34930 360 / 1e-110 disease resistance family protein / LRR family protein (.1) Lus10031824 [exp] 65 / 6e-12 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G056200 [exp] 198 / 6e-65 AT2G32060 201 / 9e-68 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.005G206300 [exp] 195 / 8e-64 AT2G32060 201 / 2e-67 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.001G046600 [exp] 182 / 1e-58 AT2G32060 194 / 8e-65 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.003G181200 [exp] 182 / 1e-58 AT2G32060 188 / 1e-62 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.006G058600 [exp] 132 / 8e-37 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.016G049600 [exp] 130 / 2e-36 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.016G049400 [exp] 126 / 7e-35 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1) Potri.007G001000 [exp] 69 / 2e-13 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G040200 [exp] 64 / 2e-11 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 62 / 3e-11 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10023825 pacid=23160754 polypeptide=Lus10023825 locus=Lus10023825.g ID=Lus10023825.BGIv1.0 annot-version=v1.0 ATGTCAGGTGAAGAGGTTGCTGTTCAACAGCCAGAGGCCGTCCCTGTCGCGGCTCCAGCAGCTGCTTTGGGCGAGCCGATGGATTTGATGACTGCCTTGC AGCTTGTGCTGAGGAAGGCCCTTGCTCATGGTGGTCTTGTAAAAGGGCTTCATGAAGGTGCCAAAGTGATCGAGAAGCACACTGCTCAGCTGTGTGTATT GGCAGAGGACTGCAACCAGGCTGACTATGTGAAACTGGTGAAAGCTCTCTGTGCTGATCACAATGTTAACTTGATGACTGTACCCAGCGCCAAGACCCTC GGCGAATGGGCAGGGCTATGCAAGATCGATTCGGAGGGGAAAGCAAGGAAGGTTGTGGGAGCCTCCATGGTCGTTGTTAAGGAACCGATTGGAAGGCGAC GTTCGCTGTTGTTCGGCGGTGACAAGAGCGTGCTGTTCGTGGATATATCGAGGAATATGTTCGAGTTCGATTTCGGGAAAGTTGCGGCGTTTCCTCCGAA CATGACGAATTTGGATGTGAATCATAACAAGATATACGGGAAGATTCCGGCGGGGTTGGTGAAGCTGGATCTGCAGTTTTTTAATGCCAGTTATAATCGG CTGTGTGGGGAGATTCCCGCCGGCGGGAAGTTGCAGAGCTTTGATTCTACGGCTTATTTCCATAACCAGTGCCTGTGTGGAATCCCGCTCGAGAGCTGTA AGTGA
AA sequence Show only first row Show all	>Lus10023825 pacid=23160754 polypeptide=Lus10023825 locus=Lus10023825.g ID=Lus10023825.BGIv1.0 annot-version=v1.0 MSGEEVAVQQPEAVPVAAPAAALGEPMDLMTALQLVLRKALAHGGLVKGLHEGAKVIEKHTAQLCVLAEDCNQADYVKLVKALCADHNVNLMTVPSAKTL GEWAGLCKIDSEGKARKVVGASMVVVKEPIGRRRSLLFGGDKSVLFVDISRNMFEFDFGKVAAFPPNMTNLDVNHNKIYGKIPAGLVKLDLQFFNASYNR LCGEIPAGGKLQSFDSTAYFHNQCLCGIPLESCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	0	1
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	1.7	0.8973
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	3.5	0.8846
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10012464 [exp]	4.2	0.8552
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	4.9	0.8736
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10024942 [exp]	7.1	0.8225
AT3G12150			unknown protein		Lus10035501 [exp]	7.4	0.8587
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	7.7	0.8721
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	9.9	0.8493
AT5G39850			Ribosomal protein S4 (.1)		Lus10042193 [exp]	9.9	0.8472
AT3G10950			Zinc-binding ribosomal protein...		Lus10011359 [exp]	10.5	0.8174

Compare expression of checked genes

Lus10023825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.