Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12150 577 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027799 [exp] 627 / 0 AT3G12150 556 / 0.0 unknown protein Lus10021026 [exp] 482 / 4e-172 AT3G12150 392 / 4e-137 unknown protein Lus10035501 [exp] 375 / 1e-127 AT3G12150 333 / 3e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049700 [exp] 598 / 0 AT3G12150 615 / 0.0 unknown protein Potri.006G058400 [exp] 597 / 0 AT3G12150 623 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF09752 [flax] [poplar] DUF2048 Abhydrolase domain containing 18
Representative CDS sequence Show only first row Show all	>Lus10023826 pacid=23160658 polypeptide=Lus10023826 locus=Lus10023826.g ID=Lus10023826.BGIv1.0 annot-version=v1.0 ATGGTGAGTGTTAACATTGGGATGCTGCATTACGTGCTGGACCACATCTATGGAGCGGTAATGCACAGGACAAAGATGAGCACCCCATTCTTCTCCAAAG GATGGGGTGGCACCAAGCTTGCCCTTTTGGAGAGGATGGTGAAGGATCTGTTCCCTCCTGGAGTTGAGGGGGGTCTGAAGAACAACTGGCCTCCGAGTTC GATCCAACCGATTTGGAGAACCATATGGGAGAGCAGAACTGCTTGTTTGAGAGAAGGGGTCTTCATGACTCCTTGTGATGAACAGCTCATGAGTGCATTG CCCCCTGAGTGTCGCACTGCAAGAGTTGCTTTCCTTGCTCCCAAATCCGGCTCCCTGCAGAAGATGGCTTGTGTTGTTCATCTTGCAGGGACTGGGGATC ATACCTATGAGCGTCGGCTGCGCCTTGCTGGACCACTCCTGAAGGAAAACATTGCTACCATGGTATTGGAAAGCCCATTCTATGGAAAAAGGCGCCCGAT GCTGCAGCAAGGTGCCAAGCTCTTATGTGTCAGCGACTTGCTTCTTTTGGGTAGGGCGACGATTGAGGAAGCACGTAGTCTCCTACACTGGTTAGACTAC GAAGCAGGTTTCGGAAAGCTTGGTATTTGTGGCCTTAGTATGGGGGGCGTTCACGCTGCGATGGTTGGATCGTTGCACCCAACACCCGTCGCAACTCTCC CTTTTCTCTCTCCACACTCAGCCGTTGTGGCATTCTGCGAGGGCATCCTACAACACGGCACAGCTTGGGAGGCCCTGAGAGATGACCTTCTCGCGGAACA GAAGGATTCAATGACGCTTGAGGAAGTTAGAGCACGAATGCGCAATGTGCTCTCTCTCACAGACGTCACACGGTTTCCAGTCCCGAAGAGTCCGGACGCA GTTATTTTTGTTGCTGCAACTGATGATGGCTATGTCCCGAACTATTCGGCTTTGGAGCTGCAGAAGGCTTGGCCTGGATCAGAGGTGAGGTGGGTTAAAG GTGGACATGTTTCTTCGTTCATCCTTCACAACAGCGAGTTTCGGAGAGCGATTAAAGACGGGCTTGACAGATTAGAATGGAAAGAATCTACATTGTGCTG A
AA sequence Show only first row Show all	>Lus10023826 pacid=23160658 polypeptide=Lus10023826 locus=Lus10023826.g ID=Lus10023826.BGIv1.0 annot-version=v1.0 MVSVNIGMLHYVLDHIYGAVMHRTKMSTPFFSKGWGGTKLALLERMVKDLFPPGVEGGLKNNWPPSSIQPIWRTIWESRTACLREGVFMTPCDEQLMSAL PPECRTARVAFLAPKSGSLQKMACVVHLAGTGDHTYERRLRLAGPLLKENIATMVLESPFYGKRRPMLQQGAKLLCVSDLLLLGRATIEEARSLLHWLDY EAGFGKLGICGLSMGGVHAAMVGSLHPTPVATLPFLSPHSAVVAFCEGILQHGTAWEALRDDLLAEQKDSMTLEEVRARMRNVLSLTDVTRFPVPKSPDA VIFVAATDDGYVPNYSALELQKAWPGSEVRWVKGGHVSSFILHNSEFRRAIKDGLDRLEWKESTLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12150			unknown protein		Lus10023826 [exp]	0	1
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	2.8	0.8209
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	5.6	0.8250
					Lus10015768 [exp]	7.4	0.8008
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10015231 [exp]	8.7	0.8227
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	9.8	0.8220
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	11.7	0.8092
					Lus10043038 [exp]	14.2	0.8093
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	16.4	0.8141
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	16.8	0.8118
AT1G19050		ARR7	response regulator 7 (.1)		Lus10036642 [exp]	18.2	0.6818

Compare expression of checked genes

Lus10023826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.