Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42250 634 / 0 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT5G06905 408 / 1e-137 CYP712A2 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) AT4G15360 358 / 5e-118 CYP705A3 "cytochrome P450, family 705, subfamily A, polypeptide 3", cytochrome P450, family 705, subfamily A, polypeptide 3 (.1) AT5G47990 355 / 2e-117 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT3G20940 352 / 8e-116 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G20130 343 / 1e-112 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2) AT3G32047 343 / 2e-112 Cytochrome P450 superfamily protein (.1) AT4G15350 342 / 3e-112 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT5G42580 341 / 5e-112 CYP705A12 "cytochrome P450, family 705, subfamily A, polypeptide 12", cytochrome P450, family 705, subfamily A, polypeptide 12 (.1) AT3G20950 342 / 6e-112 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035502 [exp] 377 / 2e-125 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 329 / 6e-107 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 318 / 7e-103 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10013150 [exp] 291 / 3e-92 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10027798 [exp] 285 / 3e-92 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10013194 [exp] 288 / 4e-91 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10017742 [exp] 288 / 5e-91 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 286 / 2e-90 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 282 / 8e-89 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G057900 [exp] 736 / 0 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G190800 [exp] 507 / 1e-176 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G052600 [exp] 502 / 1e-174 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G050200 [exp] 408 / 1e-137 AT5G06905 492 / 1e-170 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.006G058200 [exp] 401 / 4e-135 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G049800 [exp] 401 / 5e-135 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058100 [exp] 385 / 2e-128 AT5G06905 509 / 3e-177 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.009G065000 [exp] 384 / 3e-128 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.001G270900 [exp] 378 / 5e-126 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066300 [exp] 369 / 9e-123 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10023827 pacid=23160706 polypeptide=Lus10023827 locus=Lus10023827.g ID=Lus10023827.BGIv1.0 annot-version=v1.0 ATGGCTCTCTACTATCCCCTCTTCTTCATTTGGCTCACCACAGCCTTCTTAGCGATTATCTTAGCTAATTCCCTCGTACGGAAACAACGCCGTATCCAGA AAACCCCAGGTGGTCCGCCGCCAAGTCCGCCGGCTCTGCCCATCATCGGCCACCTCCACCTCATCGGCAAAGTCTTCTCGAAATCCTTCCAGGGCCTGGC CCAAACATACGGCCCACTAATCCAGATCCGCATGGGCTTCTCCACCTGTATGGTGGTCTCGAACGAAGCCGTGGCTAAAGAGATCTTCAAGGCTCAAGAC CTCAACTTCTCCTCCAGGCCCGAAATGGGAGGCTCCAAGTACTTCATCTATCGTGGGTCCCGGTTCGTCATGGCCCAATACGGCGAGTATTGGCGCTTCA TGAAGAAGTTGACGATGACCTGGCTCCTGTCGGCCCCACAACTTCAGCTTTACGCTGATGTGGTCGACGAGGAGAAAGTCCGACTGGTCGAGTCAGTGGC AAGGTGCGCCGCTGACGGCGAGGTGTTCAATCTAAGCAGAGCTTTCACGAAGTTGACCAACAACACGATTTGCCGGATGGCGATGAGCACAGTGTGCTCC GGCACGAACAATGACGCCGAGGAGATCGCGGAGCTGGTGAATACATGCGTGCAACTCGCCGCGAGGCTAAGCGTGGGGGACATATTGGGACCGTTTCAGT TCCTGGACTTCTCCGGGACCGGGAAGAAGCTAGTCGGAGCGTTGACCAAGTATGACCAGATAGTTAACAGGATTATAAAGAAGCATGAAGAGAAGGCATT GGAGATGGAAGGAGGTGGACTGCAAAATGGACAAGTGAGGAAGGATATTTTGGACATTTTATTGGAGACTTACAATGATCCCAATGCTGAGGTCAGGCTT TCGAAGAACGATATCAAGTCTTTCCTCCTCGACATATTCATTGGGGGGACGCACACGACATCAACAGCGATGCAGTGGGCAATGGGTGAGCTAATAAACA ACCCGAAATTCTTCAATAAACTCCGAGCAGAAATCAACTCGGTCGTGGGACCAACTCGGTTGGTGAAACACTCAGATGTCCCCAACCTTCCTTACCTTCG AGCCGTGATTCTCGAAACTCTAAGAGTTCACCCATCGACTCCTTTGATCATTCGAGAATGTACCGAGGACTGCACGGTCAACGGATTCTCGGTCAAGTCC AAAACTAGGGTCCTAGTCAATTTGTATGCGATCATGAGGGACCCGAAGTCATGGACCAACCCAGATGAGTTTGACCCGGAGAGGTTTATGGAGGATTCGG AGGAGCGAATCGGGGAGCACCAGATGGAGTACAAGGGTCAGAATTTTAGGTATTTGCCATTTGGGAGTGGGAGGAGAGGGTGTCCGGGTGCTACTTTGGC TATGATGATGATGCATGCCGCTGTTGGTAGTTTGGTTCAGTGCTTTGATTGGAAGGTTAAGGATGGGAAGATGATCGATTTGAGTCCTGGACCCGGGTTT GCTGCCGAAATGGGTTCAACCCTCGAGTGTTATCCGGTTATGCATATTAAGCTGGTTTGA
AA sequence Show only first row Show all	>Lus10023827 pacid=23160706 polypeptide=Lus10023827 locus=Lus10023827.g ID=Lus10023827.BGIv1.0 annot-version=v1.0 MALYYPLFFIWLTTAFLAIILANSLVRKQRRIQKTPGGPPPSPPALPIIGHLHLIGKVFSKSFQGLAQTYGPLIQIRMGFSTCMVVSNEAVAKEIFKAQD LNFSSRPEMGGSKYFIYRGSRFVMAQYGEYWRFMKKLTMTWLLSAPQLQLYADVVDEEKVRLVESVARCAADGEVFNLSRAFTKLTNNTICRMAMSTVCS GTNNDAEEIAELVNTCVQLAARLSVGDILGPFQFLDFSGTGKKLVGALTKYDQIVNRIIKKHEEKALEMEGGGLQNGQVRKDILDILLETYNDPNAEVRL SKNDIKSFLLDIFIGGTHTTSTAMQWAMGELINNPKFFNKLRAEINSVVGPTRLVKHSDVPNLPYLRAVILETLRVHPSTPLIIRECTEDCTVNGFSVKS KTRVLVNLYAIMRDPKSWTNPDEFDPERFMEDSEERIGEHQMEYKGQNFRYLPFGSGRRGCPGATLAMMMMHAAVGSLVQCFDWKVKDGKMIDLSPGPGF AAEMGSTLECYPVMHIKLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	0	1
AT5G50175			unknown protein		Lus10043318 [exp]	1.7	0.8965
AT5G50175			unknown protein		Lus10019469 [exp]	4.9	0.8607
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	6.6	0.8792
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10015711 [exp]	6.7	0.8790
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	6.7	0.8396
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	8.5	0.8536
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	10.6	0.8282
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	12.1	0.8468
AT1G14950			Polyketide cyclase/dehydrase a...		Lus10033397 [exp]	12.8	0.8289
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	18.3	0.8571

Compare expression of checked genes

Lus10023827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.