Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22290 466 / 3e-165 Endoplasmic reticulum vesicle transporter protein (.1) AT1G22200 170 / 1e-49 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G36050 166 / 1e-47 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G20560 66 / 1e-11 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 66 / 2e-11 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT4G27080 64 / 5e-11 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027795 [exp] 497 / 8e-178 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 471 / 6e-167 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 426 / 2e-149 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036449 [exp] 192 / 3e-57 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036158 [exp] 181 / 6e-53 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 129 / 2e-33 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 67 / 4e-12 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10019611 [exp] 62 / 3e-10 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 61 / 5e-10 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G022800 [exp] 501 / 3e-179 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 498 / 6e-178 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.005G168800 [exp] 179 / 6e-53 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G206100 [exp] 175 / 2e-51 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 170 / 3e-49 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 142 / 2e-38 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.011G135500 [exp] 62 / 3e-10 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 61 / 6e-10 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10023828 pacid=23160815 polypeptide=Lus10023828 locus=Lus10023828.g ID=Lus10023828.BGIv1.0 annot-version=v1.0 ATGGGGGTGAAGCAGGCGATAAAGAGCCTGGATGCTTTCCCTCGTGCAGAAGAACACTTGTTGCAGAAAACGCGTTCCGGAGCTCTTGTTTCTGTTATTG GCCTTGTGATAATGGCTACATTGTTTGTTCACGAGCTCAGTTACTACCTCCACACGTATACAGTTCATCAGATGTCTGTAGATCTGACGCGTGGGCAAAC TCTTCCGATTCATATAAACGTCACATTTCCTTCTTTACCTTGTGATGTGTTGAGTGTGGATGCCATTGACATGTCGGGAAAGCATGAAGTAGATCTCGAT ACAAACATATGGAAGCTTCGGCTAAACAGTCATGGCCAGATCATTGGCACTGAATATTTGTCAGACCTTGTTGAAAAGGAACACAGTCACAATCATGATG ATAAAGATCACCATGATGATACTGAGCGGAAACTTCACAGTCATGGCTTTGATGAAGATGCTGAAAATATGATAAAGAAGGTGAAACTAGCAATGACAAA TGGAGAAGGATGCCGGGTCTACGGTGTTTTAGATGTTCAAAGGGTTGCCGGAAACTTCCACATTTCAGTTCATGGTCTGAATATTTTGGTTGCTCAAATG ATTTTTGAAGGGGCTAAGCATGTCAATGTGAGCCACATCGTTCATGATCTATCATTTGGGCCAAAATATCCTGGTATTCACAACCCTCTTGATGGGACAT CGAGGATTCTACGTGATACAAGTGGAATATTCAAATACTATATCAAGATTGTTCCCACGGAGTACAGGTACATCTCCAAGGAAGTGTTACCAACTAACCA ATTCTCAGTTACAGAATACTTTTCACCAATGAACGACTTCGATAGGTCGTGGCCAGGTTGGTTGATTTTCATACAGTCATCGTATAAACAGTCGTCTGGG ATCGTGGAATATGTGGATGTTCAGGATCGTGGAAGCACTGACGAAACCAAACACCAGAAGCGTACGATGATTCAACTGGATCATGCAGTTATCGTGTCCT CTTTCGCATATTCATTCCATGTCCCGAAAGCATTGGAGATCGAGTCAGAGCCACTAGAGATTCGATTCAAACTACAAGCGATAGACGATTTGTAA
AA sequence Show only first row Show all	>Lus10023828 pacid=23160815 polypeptide=Lus10023828 locus=Lus10023828.g ID=Lus10023828.BGIv1.0 annot-version=v1.0 MGVKQAIKSLDAFPRAEEHLLQKTRSGALVSVIGLVIMATLFVHELSYYLHTYTVHQMSVDLTRGQTLPIHINVTFPSLPCDVLSVDAIDMSGKHEVDLD TNIWKLRLNSHGQIIGTEYLSDLVEKEHSHNHDDKDHHDDTERKLHSHGFDEDAENMIKKVKLAMTNGEGCRVYGVLDVQRVAGNFHISVHGLNILVAQM IFEGAKHVNVSHIVHDLSFGPKYPGIHNPLDGTSRILRDTSGIFKYYIKIVPTEYRYISKEVLPTNQFSVTEYFSPMNDFDRSWPGWLIFIQSSYKQSSG IVEYVDVQDRGSTDETKHQKRTMIQLDHAVIVSSFAYSFHVPKALEIESEPLEIRFKLQAIDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	0	1
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	1.0	0.9714
AT4G17960			unknown protein		Lus10000314 [exp]	2.0	0.9603
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	2.4	0.9580
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	4.2	0.9482
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	7.5	0.9350
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	9.2	0.9372
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	9.2	0.9536
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	9.9	0.9426
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	11.0	0.9387
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	11.4	0.9429

Compare expression of checked genes

Lus10023828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.