Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 375 / 2e-131 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 347 / 3e-120 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT4G39990 299 / 3e-101 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT5G65270 298 / 9e-101 AtRABA4a RAB GTPase homolog A4A (.1) AT1G28550 269 / 1e-89 AtRABA1i RAB GTPase homolog A1I (.1) AT2G33870 268 / 2e-89 ArRABA1h RAB GTPase homolog A1H (.1) AT5G60860 267 / 9e-89 AtRABA1f RAB GTPase homolog A1F (.1) AT1G16920 266 / 2e-88 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G07410 265 / 3e-88 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT5G45750 265 / 6e-88 AtRABA1c RAB GTPase homolog A1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021023 [exp] 680 / 0 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10016284 [exp] 373 / 2e-130 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 372 / 5e-130 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10000637 [exp] 308 / 1e-104 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 305 / 1e-103 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 305 / 1e-103 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 305 / 2e-103 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10002725 [exp] 305 / 2e-103 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10014732 [exp] 303 / 8e-103 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050400 [exp] 365 / 3e-127 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 359 / 4e-125 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.001G270100 [exp] 345 / 2e-119 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 315 / 1e-107 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 312 / 1e-106 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.010G197200 [exp] 275 / 5e-92 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 271 / 2e-90 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.006G000300 [exp] 271 / 2e-90 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.011G070300 [exp] 271 / 3e-90 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.019G092500 [exp] 269 / 9e-90 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10023829 pacid=23160709 polypeptide=Lus10023829 locus=Lus10023829.g ID=Lus10023829.BGIv1.0 annot-version=v1.0 ATGAAGAGCTACACTAACAGCAGCAATAGATCAGAAGCCAGTCGACGGCAGAGAAGTCCACTCAGCTTCCTGTCCAGGAGCTCATCTTCCGTGGCAATGC TATCGTCGGAGCTCGAGCACGACCAAAGCTTGTCTCCTACCAGTTCGGACCATGCCAAGAACCTCGTCGATGGAAGATTCTACGTCACTGATGCAGCAGG ATTCCCTAGTTACGGGTCTTGGAACGAGTCGTCGTCCCAGTTTACGGACACTTTAACTGCTCAACATCATAGCCATCAGAGTGGTGGATCACAGCTTGGG AGACTGTCGCACCACTTGAGGTTGCCCAAGAATGTTGGTAGCTGTGGTGGTGCTTCAGGGGAAATTATGGGAGCCGCCATTGACAAGTTTCTACTGTTTC AGGACTCTGTTCCTTGTAAGATCAGAGCCAAGCGTGGATTCGCCACTCATCCTCGAAGCATTGCCGAACGAGTGAGAAGAACTAGGATTAGTGAAAGAAT GAGGAAGCTGCAAGATCTTGTACCAAACATGGACAAGGTCGTGTTGATCGGAGATTCAGCGGTAGGGAAATCACAGTTGTTGGCGCGATTCGCCAGGAAC GAATTCAGCATTGATTCCAAGGCCACGATTGGGGTCGAGTTCCAGACGAAGACGCTCAGCATCGATAACAAGACCGTCAAGGCCCAGATTTGGGACACCG CCGGCCAAGAAAGGTACAGGGCAGTAACGAGCGCGTACTACAGAGGGGCAGTGGGGGCGATGCTAGTGTACGACATGACAAAACGACAGTCGTTCGACCA CATGGCGCGGTGGCTCGAAGAACTCCGGGGACACGCTGACAAGAACATCGTCATCATGCTCATCGGAAACAAGTCCGACTTGGGGAGCCTGAGGGCGGTC CCGCAGGAGGACGCGCAGGAGTTCGCGCAGAGGGAGAACCTCTTCTTCATGGAGACGTCGGCGTTGGAGTCGACCAACGTGGAGACGGCGTTCTTGACGG TGTTGACGGAGATATACCGGATCATCAGCAAGAAAACGCTAACGGCCAACAACGAACTAGACCCAAATTCGGGGTTGTTGAAAGGGACGAGGATCATTGT GCCCGGTCAGGATACTGATTCCGGCAAGAGAGGCGGATGTTGTTGA
AA sequence Show only first row Show all	>Lus10023829 pacid=23160709 polypeptide=Lus10023829 locus=Lus10023829.g ID=Lus10023829.BGIv1.0 annot-version=v1.0 MKSYTNSSNRSEASRRQRSPLSFLSRSSSSVAMLSSELEHDQSLSPTSSDHAKNLVDGRFYVTDAAGFPSYGSWNESSSQFTDTLTAQHHSHQSGGSQLG RLSHHLRLPKNVGSCGGASGEIMGAAIDKFLLFQDSVPCKIRAKRGFATHPRSIAERVRRTRISERMRKLQDLVPNMDKVVLIGDSAVGKSQLLARFARN EFSIDSKATIGVEFQTKTLSIDNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMARWLEELRGHADKNIVIMLIGNKSDLGSLRAV PQEDAQEFAQRENLFFMETSALESTNVETAFLTVLTEIYRIISKKTLTANNELDPNSGLLKGTRIIVPGQDTDSGKRGGCC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023829 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	2.8	0.9285
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	6.0	0.9249
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	8.5	0.8879
AT2G48030			DNAse I-like superfamily prote...		Lus10042675 [exp]	10.5	0.8904
AT1G74790			catalytics (.1)		Lus10036662 [exp]	10.7	0.9028
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	11.0	0.8946
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	11.2	0.9064
AT1G74790			catalytics (.1)		Lus10033116 [exp]	11.5	0.9143
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10003010 [exp]	19.7	0.8325
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	19.8	0.9109

Compare expression of checked genes

Lus10023829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.