Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57830 356 / 1e-118 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 332 / 3e-109 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 291 / 5e-93 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 227 / 2e-68 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 222 / 1e-66 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 191 / 3e-55 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 176 / 9e-50 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 168 / 6e-47 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 164 / 2e-45 RLK receptor-like kinase (.1) AT2G36570 161 / 2e-44 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021022 [exp] 574 / 0 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 275 / 5e-87 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 271 / 6e-85 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023831 [exp] 197 / 1e-59 AT3G57830 431 / 8e-146 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 189 / 2e-54 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 187 / 1e-53 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 169 / 2e-47 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 159 / 4e-46 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10034446 [exp] 166 / 5e-46 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G057500 [exp] 385 / 6e-130 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 381 / 2e-128 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 287 / 1e-90 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 277 / 1e-87 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 220 / 5e-66 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 219 / 3e-65 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 197 / 1e-57 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 192 / 7e-56 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 183 / 2e-52 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G117200 [exp] 178 / 1e-50 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023830 pacid=23160704 polypeptide=Lus10023830 locus=Lus10023830.g ID=Lus10023830.BGIv1.0 annot-version=v1.0 ATGACGAAGGAGGAGGAAGGCGAAGGGCAGAATGGTAAATTCGTGGTGATGGATGAAGGGTTCTGTTTGGAGCTAGAGGATCTGCTGAGGGCGTCGGCTT ACGTGGCCGGGAAAGGGAGGAGCGGGATACTGTACAAGGTGGTTGTCGGAGGAAGAGGCGGAGCTGGGTCGGTGGTGGCGGTGAGGAGACTGAACGACGG CGGCGCGTGGCGGCTCAAGGAGTTTGAGTCGGAAGTCGAAGCGATTGCGAAGGTCCAACATCCGAATATCGTACGGCTGAGAGCGTATTACTACGCCAGC GATGAGAAATTGCTCGTCTCTGATTTCATCCGCAATGGGAGCCTCTACACCGCGCTGCACGGGGGGCCTGGGATTTTGCTGACACCACTGCCGTGGGCTG CAAGGCTAAGAATTGCGCAAGGAGCAGCAAGGGGGATAATGTACATACACGAGTACACCCAACGGAAGAACGTCCACCTCCACGGCAACTTAAAGTCGAC GAAGATCCTCCTCGACTCCGAGCTTCAGCCTTACATATCCGGGTTCGGACTCACACGTCTGGTCTCCACAACGACGACGACGACCACGATGACCACTTCA GCATCATCCAAGAATAAGCAGCATTTCTTGAACAACTCGATTGCGATTCCAACAACACCCTGGAATAACGCTTACTTGGCGCCCGAGGCACGAGCATTGG GAGCCAAGTTGACTCAGAAATGCGATGTGTACGCTTTCGGGATCGTCCTGATGGAGCTTCTGACGGGAAAGCTGCCCGATGCCGGGTTGGAAGGTGGTGT GAGGAAGGCGTTTCGTGAGGAAGGGCCATTGTTTGAGGTTATAGACGAGTCGCTGTTGGGTGAGGTAGGTGCCAAGACGCAGATTTTGGCGGTGTTTCAT ATTGCGTTGAGTTGTACGGAGGTGGATCCGGAGGTGCGTCCTAGGATGAAGTTCGTGTCGGAGAGCCTGGATCGGATCAAAATGGCGGTGAAGTAG
AA sequence Show only first row Show all	>Lus10023830 pacid=23160704 polypeptide=Lus10023830 locus=Lus10023830.g ID=Lus10023830.BGIv1.0 annot-version=v1.0 MTKEEEGEGQNGKFVVMDEGFCLELEDLLRASAYVAGKGRSGILYKVVVGGRGGAGSVVAVRRLNDGGAWRLKEFESEVEAIAKVQHPNIVRLRAYYYAS DEKLLVSDFIRNGSLYTALHGGPGILLTPLPWAARLRIAQGAARGIMYIHEYTQRKNVHLHGNLKSTKILLDSELQPYISGFGLTRLVSTTTTTTTMTTS ASSKNKQHFLNNSIAIPTTPWNNAYLAPEARALGAKLTQKCDVYAFGIVLMELLTGKLPDAGLEGGVRKAFREEGPLFEVIDESLLGEVGAKTQILAVFH IALSCTEVDPEVRPRMKFVSESLDRIKMAVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57830			Leucine-rich repeat protein ki...		Lus10023830 [exp]	0	1
AT3G57830			Leucine-rich repeat protein ki...		Lus10023831 [exp]	2.4	0.9787
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	8.5	0.9710
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	8.6	0.9758
AT5G26330			Cupredoxin superfamily protein...		Lus10010533 [exp]	12.5	0.9471
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	12.8	0.9716
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	15.2	0.9709
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	16.4	0.9701
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10012046 [exp]	16.8	0.9719
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	19.2	0.9705
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	20.5	0.9697

Compare expression of checked genes

Lus10023830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.