Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57830 356 / 5e-117 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 341 / 3e-111 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 202 / 6e-58 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 189 / 3e-53 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 172 / 4e-47 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 161 / 3e-43 Leucine-rich repeat protein kinase family protein (.1) AT5G62710 129 / 4e-32 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 129 / 5e-32 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 122 / 6e-30 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 121 / 2e-29 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021022 [exp] 633 / 0 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 198 / 1e-59 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 194 / 1e-54 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 167 / 4e-45 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 153 / 3e-40 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 141 / 3e-36 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 125 / 8e-31 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 125 / 1e-30 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 124 / 2e-30 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050800 [exp] 342 / 2e-111 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 341 / 3e-111 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 224 / 5e-66 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 201 / 6e-57 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 192 / 2e-54 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 192 / 3e-54 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 179 / 1e-49 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 171 / 1e-46 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 152 / 6e-40 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 142 / 3e-36 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023831 pacid=23160800 polypeptide=Lus10023831 locus=Lus10023831.g ID=Lus10023831.BGIv1.0 annot-version=v1.0 ATGCACTTCATCTTCATCATCTCCTCTCTTCTCCTCCTCCTCCTCCTCCCCAAAGCCAACTCCCTCACTTCCGAAGGCTTAGCCTTGCTCTCTCTCAAAT CGGCGATCACCTCCGACCCGACCCACTCACTCTCCTCCTGGTACGAATCCGACCCGACTCCGTGCCACTGGAACGGCGTCTCCTGCTCCGACAATAACCA ATTAGTCACCTCAATCTCCCTCCAAAACCTCCGCCTCACCGGATACATTTCATCCGAGCTCGGACTCCTCAGTTCTCTCCGCTCTCTCGATTTGTCCCGG AACAGTCTCTCGGGTCGGATCCCTGACTCGATCGGGTCGCTCCAGCTCCTCTCAAGACTCGATCTTTCGTCCAATCAGCTCGAGGGTTCCCTCCCGGAGT CTCTTGTCGAGCTCAGGAGCCTCACGGGGACGCTGAATCTGTCCTGGAATGGCTTCTCAGGGGAGATCCCGGAATCTTACGGACGGTTTCCTGTTCGGGT CAGCTTGGATTTGGGGCATAATAATCTCACCGGTAAGGTTCCTCTGGTTGGGTCGCTGGTTAACCAAGGTCCGATCGCTTTCTCCGGGAATCCGAGTCTT TGTGGGTTCCCTCTGCAGACTCCTTGCCCTGAATCTGTGAATGTGAACATCCCAGCGGAGGAAAGCCGCCGTCGAGATCGCGGCGGCGACGGCGGTGGAG AGAATCGGCTCCGCGATGTGGAGAAGTCGAGGGAGAGGAGCGGATCGGTGGCGGTTCCGTTGATCTCGGGGGTGACGGTGGTGATCGGGGCGATCACAGT GTCTGCCTGGCTAGTCCGGAGGAAATACGTGGCGACGGCGACGGAGAAAGGCAAAACGTGTAAAGACGAAGAAGAAGCTAAAGGGAGCAGAAAGGAAACG AACATTATCGTCCACGGTGATGAGGCAATGAAGGAGGAGGAAGAGGATAGGCAGAATGGTAAATTCGTGGTGATGGATGAAGGGTTCTGTTTGGAGCTAG AGGATCTGCTGAGGGCGTCGGCTTACGTGGCCGGGAAAGGGAGGAGCGGGATACTGTACAAGGTGGTTGTCGGAGGGAGAGGCGGAGCTGGGTCGGTGGT GGCGGTGAGGAGACTGAACGACGGCGGCGCGTGGCGGCTCAAGGAGTTTGAGTCGGAAGTCGAAGCGATTGCGAAGGTCCAACATCCGAATATCGTACGG CTGAGAGCGTATTACTACGCCAGCGATGAGAAATTGCTCGTCTCTGATTTCATCCGCAATGGGAGCCTCTACACCGCGCTGCACGGTACCAGAACTCTAC AAATTCATCATTTTTTCTAA
AA sequence Show only first row Show all	>Lus10023831 pacid=23160800 polypeptide=Lus10023831 locus=Lus10023831.g ID=Lus10023831.BGIv1.0 annot-version=v1.0 MHFIFIISSLLLLLLLPKANSLTSEGLALLSLKSAITSDPTHSLSSWYESDPTPCHWNGVSCSDNNQLVTSISLQNLRLTGYISSELGLLSSLRSLDLSR NSLSGRIPDSIGSLQLLSRLDLSSNQLEGSLPESLVELRSLTGTLNLSWNGFSGEIPESYGRFPVRVSLDLGHNNLTGKVPLVGSLVNQGPIAFSGNPSL CGFPLQTPCPESVNVNIPAEESRRRDRGGDGGGENRLRDVEKSRERSGSVAVPLISGVTVVIGAITVSAWLVRRKYVATATEKGKTCKDEEEAKGSRKET NIIVHGDEAMKEEEEDRQNGKFVVMDEGFCLELEDLLRASAYVAGKGRSGILYKVVVGGRGGAGSVVAVRRLNDGGAWRLKEFESEVEAIAKVQHPNIVR LRAYYYASDEKLLVSDFIRNGSLYTALHGTRTLQIHHFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57830			Leucine-rich repeat protein ki...		Lus10023831 [exp]	0	1
AT3G57830			Leucine-rich repeat protein ki...		Lus10023830 [exp]	2.4	0.9787
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	3.6	0.9825
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	7.6	0.9801
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	8.0	0.9793
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	9.3	0.9795
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10037371 [exp]	10.4	0.9766
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	11.4	0.9789
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	13.8	0.9734
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	15.2	0.9784
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	16.0	0.9784

Compare expression of checked genes

Lus10023831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.