Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49430 952 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT1G64400 820 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G23850 798 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 791 / 0 AMP-dependent synthetase and ligase family protein (.1) AT2G47240 615 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 486 / 1e-163 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 461 / 5e-154 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G04350 335 / 3e-105 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 311 / 2e-96 LACS9 long chain acyl-CoA synthetase 9 (.1) AT3G23790 159 / 6e-41 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021021 [exp] 1320 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032380 [exp] 788 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 708 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10023089 [exp] 691 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10032840 [exp] 609 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 580 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 469 / 7e-157 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 467 / 5e-156 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 452 / 1e-150 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109900 [exp] 1086 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.001G091900 [exp] 805 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 803 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.002G192400 [exp] 620 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.010G090200 [exp] 476 / 7e-160 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 469 / 3e-157 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.014G169400 [exp] 323 / 1e-100 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 318 / 9e-99 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.002G084100 [exp] 296 / 7e-91 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 292 / 2e-90 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10023832 pacid=23160747 polypeptide=Lus10023832 locus=Lus10023832.g ID=Lus10023832.BGIv1.0 annot-version=v1.0 ATGGCAATGGAGGATCGTCAGTACGAGTACTTGGTGAAGGTTGGAGAGGCAGAGGATTCTTCTGCAGGGCCTGTTTACAGAAGCATCTACGCCAAAGATG GGCTTCTCCAACTTCCACAGGATCTCCATTCTCCATGGCACTTCTTCAGTGATTCGGCAGCTAAGTACCCTAACAATCCGATGTTGGGTCGTCGTGAAGT AGTAGAATCCAAGGCAGGAGCATACACATGGCTGACTTACAAACAAGTTCATGATTCAGCCTTGAAGATCGGTTCTGCAATGAGAACCAAAGGAATCAAC CCTGGTGATCGTTGTGGTATCTATGGCTCTAACAGCCCTCAATGGATCACTGCAATGGAGGCTTGTAACAGTCAGGCTGTCACTTATGTCCCGCTCTACG ACACACTCGGTGCTAATGCAGTGGAGTTCATCATCAATCATGCTGAAGTGTCTATTGCTTTTGTTCAAGAGAACAAGCTTCCTGCTGTTCTGTCCTGCCT CTCAAACTGCTGTTCATATTTGAAAACCATCATTAGCTTTGGAGGCATTTCGGCTGAGCAGAAGAACGAAGCTGAGGAGCTAGGGGTGTCTTGTTACTCA TGGGAAAATTTTTCCCAGTTGGGAAGTTTGGATTGCGAGCTGCCTCGGAAGAAAAAGACAGACATTTGCAACATAATGTACACCAGTGGAACTACTGGAG AACCTAAAGGAGTTATCATCTCGAATGGAGCTCTCATGGCAGAAGTTCTGTCTGTGGATCAATTGCTTTTCCTGACCGATAGAACGCTTGATGAAAAAGA TGTATACTTCTCCTTCTTGCCTTTGGCTCACATCTATGACCAAGTAATGGCGAGCTACTGCATCTCGAAAGCCGCCTCCATAGGGTTCTGGCAAGGGGAT GTAAGATTCTTGATGGAGGATCTCCAGATGTTGAAGCCAACTATGTTTTGTGGGGTTCCTCGAGTTTACGACCGCATTTACAGTGGTACAATGAGCAAGG TCGCATCGTCAGGGGCAGTAAGGAAAAAGATCTTCGATTTCGCATATAACTACAAGCTGGGAAATCTTGAGAAAGGATTCCCACAAGCCAAGGCTGCACC ATTCTTCGATAAACTCGTCTTCGAAAAGATAAAATTAGCACTGGGAGGGCGAGTTCGGATTCTGTTATCTGGTGCTGCACCTTTGCCTAGACATGTTGAG GAATTCCTAAGGGTCATTTCCTGCTCCACTTTATCACAGGGCTATGGCCTCACCGAAAGTTGCGGTGGATGCTTCCCCTCCATAGGTGATATATACCCTA TGGTGGGGACAGTTGGTGTCCCCATGCCAACCATCGAGGCCCGGCTTGAGTCGGTTCCGGAGATGGGATACGATGCGCTAGCAAGCGTGCCACGTGGAGA GATTTGCCTGAGGGGGAACACCTTGTTCTCCGGTTACCACAAGCGCGAAGATCTGACCAGAGAAGTTCTGGTCGACGGTTGGTTTCACACAGGTGACATT GGCGAGCTGCAACCAAATGGAGCCATGAAGATCATTGACAGGAAGAAGAACATCTTCAAGCTGTCTCAAGGCGAATATGTTGCAGTGGAGAGTCTCGAAA ACACCTACTCGAGATGCCCCGTCATAGCTTCAATATGGGTATACGGCAACAGTTTCGAGTCGTTCCTGGTCGCAGTTGTGATCCCGGAGAAGAAATCGCT CGAGGACTGGGCAGCACAGCATAATTTGAAGGATGATGATTATATTTCTCTGTGCAAGAATAAGCAGGCCAGAAAGTACATTCTAGATGAGCTGAACATC ATTGGCAAGAATCACAAACTGAAAGGGTTCGAGATGCTGAAAGCTGTGCACCTGGAACCGGTTCCATTCGACATGGAGAGAGACCTTGTAACCCCAACAT TCAAGTTCAAGAGACCTCAGTTACTGAAATATTACAGGGAATGCATTGATCAACTTTACCAGGAAGCTAAGGAGTCCAAGCCTTGA
AA sequence Show only first row Show all	>Lus10023832 pacid=23160747 polypeptide=Lus10023832 locus=Lus10023832.g ID=Lus10023832.BGIv1.0 annot-version=v1.0 MAMEDRQYEYLVKVGEAEDSSAGPVYRSIYAKDGLLQLPQDLHSPWHFFSDSAAKYPNNPMLGRREVVESKAGAYTWLTYKQVHDSALKIGSAMRTKGIN PGDRCGIYGSNSPQWITAMEACNSQAVTYVPLYDTLGANAVEFIINHAEVSIAFVQENKLPAVLSCLSNCCSYLKTIISFGGISAEQKNEAEELGVSCYS WENFSQLGSLDCELPRKKKTDICNIMYTSGTTGEPKGVIISNGALMAEVLSVDQLLFLTDRTLDEKDVYFSFLPLAHIYDQVMASYCISKAASIGFWQGD VRFLMEDLQMLKPTMFCGVPRVYDRIYSGTMSKVASSGAVRKKIFDFAYNYKLGNLEKGFPQAKAAPFFDKLVFEKIKLALGGRVRILLSGAAPLPRHVE EFLRVISCSTLSQGYGLTESCGGCFPSIGDIYPMVGTVGVPMPTIEARLESVPEMGYDALASVPRGEICLRGNTLFSGYHKREDLTREVLVDGWFHTGDI GELQPNGAMKIIDRKKNIFKLSQGEYVAVESLENTYSRCPVIASIWVYGNSFESFLVAVVIPEKKSLEDWAAQHNLKDDDYISLCKNKQARKYILDELNI IGKNHKLKGFEMLKAVHLEPVPFDMERDLVTPTFKFKRPQLLKYYRECIDQLYQEAKESKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	0	1
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10020584 [exp]	4.9	0.7952
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10008500 [exp]	18.4	0.7762
AT3G50390			Transducin/WD40 repeat-like su...		Lus10009510 [exp]	19.9	0.6637
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	23.4	0.7256
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017057 [exp]	25.0	0.6953
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	26.7	0.7761
AT4G27870			Vacuolar iron transporter (VIT...		Lus10035731 [exp]	26.8	0.7512
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10040986 [exp]	27.0	0.7143
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	28.8	0.7293
					Lus10033897 [exp]	32.1	0.7688

Compare expression of checked genes

Lus10023832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.