Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50830 167 / 4e-53 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 162 / 3e-51 Cold acclimation protein WCOR413 family (.1) AT2G15970 144 / 3e-44 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2) AT2G23680 96 / 1e-25 Cold acclimation protein WCOR413 family (.1.2) AT1G29390 61 / 6e-12 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 53 / 5e-09 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021020 [exp] 262 / 2e-90 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10012034 [exp] 185 / 5e-60 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027946 [exp] 183 / 2e-59 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 179 / 8e-58 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 179 / 9e-58 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 174 / 1e-55 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1) Lus10004547 [exp] 53 / 1e-08 AT1G29395 140 / 3e-41 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10025378 [exp] 47 / 2e-06 AT1G29390 225 / 2e-74 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10015258 [exp] 47 / 2e-06 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109800 [exp] 208 / 4e-69 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.007G033801 [exp] 184 / 5e-60 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 184 / 6e-60 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 49 / 1e-07 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10023833 pacid=23160668 polypeptide=Lus10023833 locus=Lus10023833.g ID=Lus10023833.BGIv1.0 annot-version=v1.0 ATGAAGACAGACAGAGGGAGCAGCAGCTTGGGGAGCGATTTGATCTCTTCCGATGTCAAAGAGCTAGCTTTAGCGGCGAAGAAGCTCGTGATTCATCTGG GCATCGTCGCCGGATTCGGCACCTCTTTCCTCGAGTGGCTTGCTGCTATTGCCGCTATAGGGGAGTTTGGGAAATGGGTTGCTTTCATTGCTGTTGTACT ACGCCTGTTCTTCCCTGACCGCTTCCCAGATTGGCTAGAGATGCCTGGAGCTTTGATTCTACTGATAGTGGTAGCCCCGGGTTTGTTCGCTTCTACACTG AGGAACAACTTGGTCGGTGTGGGGATTTGCCTTGCGATAGCTTGCTACTTGCTGCAAGAACACATTAGAGCATCTGGTGGGTTCAGAAACTCGTTTACGA AAGCCAACGGTATCTCCAACACCATCGGCATTATCCTCCTCTTTGTTTATCCTGTCTGGGCTCTGATTGTTGACTTGGTCTGA
AA sequence Show only first row Show all	>Lus10023833 pacid=23160668 polypeptide=Lus10023833 locus=Lus10023833.g ID=Lus10023833.BGIv1.0 annot-version=v1.0 MKTDRGSSSLGSDLISSDVKELALAAKKLVIHLGIVAGFGTSFLEWLAAIAAIGEFGKWVAFIAVVLRLFFPDRFPDWLEMPGALILLIVVAPGLFASTL RNNLVGVGICLAIACYLLQEHIRASGGFRNSFTKANGISNTIGIILLFVYPVWALIVDLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10023833 [exp]	0	1
AT1G47820			unknown protein		Lus10035088 [exp]	2.4	0.8541
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	2.6	0.8740
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	4.5	0.8340
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	4.9	0.8196
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	5.2	0.8394
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	6.0	0.8242
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	9.5	0.8279
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	10.9	0.8235
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10011695 [exp]	11.1	0.7660
AT4G04614			unknown protein		Lus10006902 [exp]	13.1	0.7963

Compare expression of checked genes

Lus10023833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.