Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18940 369 / 9e-130 clast3-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021018 [exp] 372 / 2e-130 AT3G18940 236 / 6e-77 clast3-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G148700 [exp] 418 / 7e-149 AT3G18940 368 / 3e-129 clast3-related (.1) Potri.004G148500 [exp] 417 / 8e-149 AT3G18940 368 / 3e-129 clast3-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [flax] [poplar] PUP PF09754 [flax] [poplar] PAC2 PAC2 family
Representative CDS sequence Show only first row Show all	>Lus10023834 pacid=23160691 polypeptide=Lus10023834 locus=Lus10023834.g ID=Lus10023834.BGIv1.0 annot-version=v1.0 ATGGAATTCATAACCGAGCCTGGAAAGCAAGCTCACCCAGATTGTTCCACTCTCATACTGCCGGCACTGTCGATCGGGAACGTAGGACAATTGGCGGTGG ATCTGTTGGTATCATCAACCGGAGCTGGGAGAATTGGATATTTGGATGATCCTTACACCCTTCCTTGCGTTGGTAATGATGCATATGGCCCTAGCCCGCC CGGGGACCTTGCTCTCCCTCTTGAAGCTTATCAGTCACCTTCCAATGCAATGGCTCTCGTCCAGCAGCGGTCTCCGGTTGTTAAGGGTATGATGGTTGAA TTTGCTAAGAACTTGGCTGAGTATGCTGTTGCTAGTGGAAAGAAGCATGTAGTTATTCTCTCCAGCTTGGAGTTCGCAAGGTGGCAAAAGATTGATATGT CGAGTGGTTTGCAGATATACTACCTCTCAACCTCGAATGCAGATGGAACAGATGATTATTGTGGACAACTTGGGTGGAAAAAGCTTCAGGATTATGATCC TGATCTAAGATCTTGGAAGTATCTCAGCAGTTTGGCTGATGGTAGCAGCACGATGCACGAAAGTAGCTTGCCATTTGAGGATGAACCAGAAGAAGAAGAT TATTGCGCAAGTCTACCTTTCGCTGCTCTTTTCTCATGTTTGAAGGCCAAAGGTTTGAAGGTCACATGCGTATTGTGTTACTGCTCCGAGGGAGACAACA TGTCTGATTCTTTCGAGCTAGCGGAGGCAGCATCCAAGTTCCTCCAGCTGAAACCTGATAATTTCATCGCCGGAGACGATAATAAGTGGCGCATACCACT TTCGTGGAACACCGTGTATGGACCACCTCCAGATTTGTCTATGTTTTAG
AA sequence Show only first row Show all	>Lus10023834 pacid=23160691 polypeptide=Lus10023834 locus=Lus10023834.g ID=Lus10023834.BGIv1.0 annot-version=v1.0 MEFITEPGKQAHPDCSTLILPALSIGNVGQLAVDLLVSSTGAGRIGYLDDPYTLPCVGNDAYGPSPPGDLALPLEAYQSPSNAMALVQQRSPVVKGMMVE FAKNLAEYAVASGKKHVVILSSLEFARWQKIDMSSGLQIYYLSTSNADGTDDYCGQLGWKKLQDYDPDLRSWKYLSSLADGSSTMHESSLPFEDEPEEED YCASLPFAALFSCLKAKGLKVTCVLCYCSEGDNMSDSFELAEAASKFLQLKPDNFIAGDDNKWRIPLSWNTVYGPPPDLSMF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18940			clast3-related (.1)		Lus10023834 [exp]	0	1
AT5G27920			F-box family protein (.1)		Lus10029869 [exp]	4.0	0.8945
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	4.7	0.9234
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	5.2	0.9141
AT3G10120			unknown protein		Lus10027167 [exp]	7.7	0.9172
AT1G59520		CW7	CW7 (.1.2.3)		Lus10003786 [exp]	7.7	0.8759
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	10.2	0.8639
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	11.6	0.9070
AT5G26800			unknown protein		Lus10011180 [exp]	12.8	0.8973
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10022025 [exp]	15.0	0.9009
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	15.0	0.8888

Compare expression of checked genes

Lus10023834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.