Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52980 612 / 0 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT3G07050 159 / 8e-42 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT2G27200 95 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 93 / 1e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 66 / 4e-11 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021017 [exp] 743 / 0 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10028574 [exp] 156 / 1e-40 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 153 / 1e-39 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018858 [exp] 120 / 6e-29 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10021016 [exp] 97 / 7e-24 AT1G52980 81 / 7e-19 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10004103 [exp] 97 / 9e-21 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 96 / 1e-20 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006927 [exp] 61 / 1e-09 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 59 / 7e-09 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G402500 [exp] 668 / 0 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.002G241100 [exp] 149 / 2e-38 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.009G017000 [exp] 93 / 2e-19 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 65 / 6e-11 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.012G083100 [exp] 45 / 0.0001 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08153 [flax] [poplar] NGP1NT NGP1NT (NUC091) domain CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10023835 pacid=23160785 polypeptide=Lus10023835 locus=Lus10023835.g ID=Lus10023835.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAGAAGGAGCAGAAGGTCAACGTATCGGGGAAGCCTAAGCACTCCCTCGATACCAACCGGAGCAATGGCGCCGCAAGCAGCAGTACCAATT CACGAAGTGCGGCCACCGTCCGGCGACTAAAGATGTACAAAAACAGGCCTAAACGTGACAGTAAAGGTCACGTACTCAAGCACGATCTCCAATCGAAAGA CCTTCCTAACACTCGTATCCAGCCCGATCGACGCTGGTTTGGGAACACCAGAGTTGTTGGTCAAAAGGAGCTTGAAGTTTTCAGGGAAGAGATTGATTCA CGAAAATCAAGCACCTATAATGTTATCTTGAGAGGAAAGAACCTGCCATTATCTCTTCTCAGTGATCACCGGAAGCAAGCAAGAGTTCATCTCCTTGATA CTGAGCCTTTTGGGGATGCATTTGGACCTAAGAGAAAGAGGAAACGCCCAAGACTTTTGGCTTCAGATTACGAGTCTTTGGTTAAGAAAGCTTATGATTC TCATGATGCTTTTGAGGTGAAGTATGAGAATGCTGGGACTACCGAAGGAGATGATGAGGATGGATTTAGAGATCTTGTGCGGCACACAATGTTTGAGAAG GGCCAAAGTAAACGTATATGGGGTGAGCTGTACAAGGTTATAGACTCGTCTGACGTTGTTGTGCAAGTAAGTTGTGTTGCTATTATCATAATCATAGAGT TTGGCTGGTTCGGTGAACTTGCATCAGGTCTTGTGCTGTCTTCTTACAGCATTGCTCCTCTTCATGTGCTTTCCAGGTTTTGGATGCGAGGGACCCCCAA GTGTGATCTTGTCCCTGCTTGGGCAACAAAAGGATGGCTCAGGGTATTATCCAAGGAATATCCAACTCTAGCATTCCATGCTAGTATCAATAAGTCATTT GGCAAGGCATTGAATTCTGCAGCATTTTCCATCATTAATGGGTATTTTGCTTTGGGTTCTCTTCTATCAGTACTGAGACAGTATGCTCGCTTAAAGAATG ACAAGCAAGCCATATCAGTTGGATTCGTTGGATATCCCAATGTTGGCAAGTCATCGGTTATCAACACATTGCGAACGAAGAATGTCTGCAAAGTTGCTCC TATACCTGGCGAGACTAAAGTGTGGCAGTACATAACTCTTACCAAGAGAATCTTTTTGATCGACTGTCCTGGAGTTGTTTATGAGAACAACAAAGATTCT GAAACAGATATTGTACTCAAGGGTGTGGTTCGCGTGACAAACTTGGAAGATGCTACTGAACACATAGGGGAAGTTCTGAAACGTGTGAAAAAGGAACACT TGAAACGGGCGTATAAGATAGATGACTGGGTAGATGACAACGATTTTCTGTTTCAGCTGTGCAAATCTAGTGGCAAACTTTTGAAGGGAGGCGAGCCGGA CATGGCAACCGCTGCAAAGATGATACTTCACGACTGGCAAAGGGGTAAAATCCCGTTTTTCGTCCCACCTCCGCAACAAGAAGAACAAAACCCATCAGAA GGAGAAGCTTTGGTGGAAGGTGCAGTAGCAGCAGATGAGGAGGCTGGCGGTGAGAGTAACAAATCGGAATCTGCAGCTTTGAAAGCCATCGCCAATGTTA TTAACACTCAGCAACAAAGAAGTGTACCAGTCCAGAGGGATCTATTTAGTGAGAATGAGTTAAAGGGTGGTGGTGAAGAACAGCTCGAGGAGATTGATGA TGAAGAAGAAGCAGATACTGATGAAGAAGAAGAAGATGAAGAATCAGAAGAAGATGGAGAAGATGAAGAAGAAGCTGCAACAGACGGAGAAGCAGATGCC TGA
AA sequence Show only first row Show all	>Lus10023835 pacid=23160785 polypeptide=Lus10023835 locus=Lus10023835.g ID=Lus10023835.BGIv1.0 annot-version=v1.0 MVKKKEQKVNVSGKPKHSLDTNRSNGAASSSTNSRSAATVRRLKMYKNRPKRDSKGHVLKHDLQSKDLPNTRIQPDRRWFGNTRVVGQKELEVFREEIDS RKSSTYNVILRGKNLPLSLLSDHRKQARVHLLDTEPFGDAFGPKRKRKRPRLLASDYESLVKKAYDSHDAFEVKYENAGTTEGDDEDGFRDLVRHTMFEK GQSKRIWGELYKVIDSSDVVVQVSCVAIIIIIEFGWFGELASGLVLSSYSIAPLHVLSRFWMRGTPKCDLVPAWATKGWLRVLSKEYPTLAFHASINKSF GKALNSAAFSIINGYFALGSLLSVLRQYARLKNDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYENNKDS ETDIVLKGVVRVTNLEDATEHIGEVLKRVKKEHLKRAYKIDDWVDDNDFLFQLCKSSGKLLKGGEPDMATAAKMILHDWQRGKIPFFVPPPQQEEQNPSE GEALVEGAVAADEEAGGESNKSESAALKAIANVINTQQQRSVPVQRDLFSENELKGGGEEQLEEIDDEEEADTDEEEEDEESEEDGEDEEEAATDGEADA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	0	1
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	1.4	0.9066
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	1.4	0.9081
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	2.4	0.8968
AT1G60640			unknown protein		Lus10033578 [exp]	4.2	0.8896
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	5.3	0.8940
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	5.5	0.8907
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	5.7	0.8799
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	7.9	0.8501
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	9.4	0.8701
AT4G39690			unknown protein		Lus10016813 [exp]	13.6	0.8085

Compare expression of checked genes

Lus10023835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.