Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18950 369 / 9e-123 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 357 / 5e-118 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 354 / 4e-117 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 340 / 1e-111 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 327 / 9e-107 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 300 / 1e-97 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 192 / 8e-56 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 174 / 5e-49 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 173 / 1e-48 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 169 / 4e-47 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021014 [exp] 593 / 0 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 399 / 2e-134 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 367 / 7e-123 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 360 / 3e-120 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 353 / 2e-117 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 347 / 8e-115 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 332 / 6e-109 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 278 / 1e-86 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 182 / 6e-52 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109500 [exp] 419 / 8e-143 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 397 / 3e-134 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 355 / 2e-116 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 342 / 2e-112 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 341 / 8e-112 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 335 / 9e-110 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 194 / 1e-55 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 184 / 2e-52 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 180 / 3e-51 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 171 / 1e-47 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023836 pacid=23160651 polypeptide=Lus10023836 locus=Lus10023836.g ID=Lus10023836.BGIv1.0 annot-version=v1.0 ATGAACACTATCAACCACCGCCACCCACAAATCCGCCGCCTTAAGCTAGCCGCACTCCTAAACTCCGACCTCCACCCCGCCGTTAGCGAAGAATACAACA ACAACATCGAAATCATCATCCACAGTCCGACCTCCGATTCCTCTAGCTCAACCAGCACTCCACGGAACTCCAATTCCAGCAGCAACTCCGATTCTCCGAC GAACATCAACCACCTTCCGTTGTCTCCTTACGCTAAATCCCCCTGGATCGTTCCTTCACCTGCTCTCATCACCAACGACGACGACAGCGCTGATCATAAT TGCCTGATCGGATCGATTGTCCGGCAGCAACAAGGACACGTGTACTCACTAGCCGTCTCCGGCGACTTGCTGTACACCGGGTCCGACAGCAAGAACATCC GCGTGTGGAGGAATCTGGAAGAGTTTGCCGGATTCAAGTCGAAGAGCGGACTGGTGAAGGCGATTGTTATCCACGGCGATCGGATCTTCACCGGACACCA GGACGGCAAGATCCGTATCTGGAACGGAGCTTACAAACGGGTAGGGAGCTTACCGACTTTGAAGAACTCGATTAAGAGCTCGTTCAGTCCCAAGAACTAC GTCGAGGTCCGGGGGAAGAAGAGCGTCCTGAAAATTAAGCACTACGACGCCGTTTCTTCCATGGCCTTGGATTCCGATCTGGACCTTTTATACTCTGGAT CTTGGGATAAAACATTGAAAGTGTGGCGGATTCGCAATAACGATTCGTCGGATTATAAATGCTTGGAGTCGATTAATGCTCACGATGACGCAATTAACGC GGTCGCCACAGGATTCGACTCCTTAGTTTTCACCGGATCGGCCGACGGGACGGTGAAGGTGTGGAGGCGGGAGGTGGAAGAGGTGGAAGGGGAAGCGAGA TTTAGTCATTCCGCCGCCGGCGAAGGAGGAGAATCGGTGCTGTACTGCGCGTCGTCGGACGGGATGGTGAATTTCTCGGTAGGAGGGAAACAGTTATCGT ACGGTGGAGCTATGAGAGGCCACAAAACGGCGGTTCTCTGCGTGGTCACGGCGGGGAATTTGGTGCTGAGTGGGTCCGCTGACAACACGATTTGTGTGTG GAGGAGGGAAGCCGGTGGGCTCCACGTTTTCTTATCTGTTTTGACGGGCCACAGTGGGCCCGTCAAGTGTCTCGCCGTGGATGAGGAGAACGGTAACGAG CTTGATGCAAAACGACGACGGCGGTTTAGAGTGTACAGTGGGAGCTTGGACAGTTCGGTGAAGATATGGCGCGTGGAGGATCACGCTCTTTCGGAGCGGA GAGACTATAATCAAAATCAATCACCTCGGATTAGTTACAGTCAAACTCCTCCTCTAGAACAGAACAACAGGCGGGAAAAAGTTGAAAAAGAGGTCGTTGC CTTATTTGTGGTTACAATTAAAGAAGACGAGTATCGGCTTCTTCAGCTTCTTGAAGCTGTTCTCGTCCCTGCTCAAATGTCAGCGACGATCGCTCTCTCA AATGCCATGAGAAACCAGCTAACGCTAATCTCTGTTCAGAATTGGAATTTTAGAGGGATGGGAGAAGACGGCAGTCAGCCGGAGTGGCCCGAGGAGCTGT AG
AA sequence Show only first row Show all	>Lus10023836 pacid=23160651 polypeptide=Lus10023836 locus=Lus10023836.g ID=Lus10023836.BGIv1.0 annot-version=v1.0 MNTINHRHPQIRRLKLAALLNSDLHPAVSEEYNNNIEIIIHSPTSDSSSSTSTPRNSNSSSNSDSPTNINHLPLSPYAKSPWIVPSPALITNDDDSADHN CLIGSIVRQQQGHVYSLAVSGDLLYTGSDSKNIRVWRNLEEFAGFKSKSGLVKAIVIHGDRIFTGHQDGKIRIWNGAYKRVGSLPTLKNSIKSSFSPKNY VEVRGKKSVLKIKHYDAVSSMALDSDLDLLYSGSWDKTLKVWRIRNNDSSDYKCLESINAHDDAINAVATGFDSLVFTGSADGTVKVWRREVEEVEGEAR FSHSAAGEGGESVLYCASSDGMVNFSVGGKQLSYGGAMRGHKTAVLCVVTAGNLVLSGSADNTICVWRREAGGLHVFLSVLTGHSGPVKCLAVDEENGNE LDAKRRRRFRVYSGSLDSSVKIWRVEDHALSERRDYNQNQSPRISYSQTPPLEQNNRREKVEKEVVALFVVTIKEDEYRLLQLLEAVLVPAQMSATIALS NAMRNQLTLISVQNWNFRGMGEDGSQPEWPEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18950			Transducin/WD40 repeat-like su...		Lus10023836 [exp]	0	1
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	2.0	0.9001
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	3.5	0.9306
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	4.0	0.8871
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	5.8	0.9171
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	9.2	0.9023
AT3G52740			unknown protein		Lus10014197 [exp]	13.7	0.8774
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	13.9	0.8890
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	14.3	0.8954
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	15.4	0.8587
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	15.6	0.8707

Compare expression of checked genes

Lus10023836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.