Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40080 179 / 3e-53 ENTH/ANTH/VHS superfamily protein (.1) AT5G10410 86 / 7e-19 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 82 / 6e-17 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 79 / 4e-16 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 74 / 2e-14 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 74 / 2e-14 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 72 / 7e-14 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 69 / 1e-12 ENTH/ANTH/VHS superfamily protein (.1.2) AT5G65370 65 / 8e-12 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 64 / 3e-11 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002643 [exp] 135 / 2e-38 AT4G40080 203 / 8e-65 ENTH/ANTH/VHS superfamily protein (.1) Lus10002642 [exp] 134 / 4e-38 AT4G40080 199 / 2e-63 ENTH/ANTH/VHS superfamily protein (.1) Lus10002641 [exp] 104 / 3e-27 AT4G40080 164 / 4e-50 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 79 / 8e-16 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 79 / 9e-16 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 78 / 1e-15 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 78 / 2e-15 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 72 / 1e-13 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 69 / 1e-12 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160800 [exp] 263 / 4e-86 AT4G40080 209 / 2e-64 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 77 / 1e-15 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 75 / 1e-14 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 69 / 2e-13 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 71 / 3e-13 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 70 / 3e-13 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 70 / 5e-13 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 67 / 3e-12 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 67 / 3e-12 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 66 / 1e-11 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10023837 pacid=23160832 polypeptide=Lus10023837 locus=Lus10023837.g ID=Lus10023837.BGIv1.0 annot-version=v1.0 ATGGTCCGCCACCGGAACCGCCTGAGATTCCTCGTCGGGATCCTCAAAGACAAGTCATCTCTCCTCAAGACCCTCCTCCTCTCAACCAAACGCAACACCA AGCTCCGCCTCGCCATCCTACGCGCCACCTCGCACGTGCCTTCCACTTCCCCATCCAACCGCTCACTGTCCGCCGTCTTGTCACTCGGCGGCGAAGGCTC TCGCCGTACAGCCGCCGCCTGCATCAACTCCCTCATGGACCGTCTCCACGGCTCGAACAACGCCCACGTCGCCCTCAAGTGCCTATTGACGCTACACGCC GTCGTTTCGAGAGGCTCCTTCATACTCAAAGACCAGTTGTCGGGTGGGCCATCTCCCGGCAGGAACTTCCTCAACCTGAGAAACTTCCGGGACGGATCCG ACCCGGAAACATGGGAACTGTCCGCCTGGGTCCGGTGGTACGCCGCCGTGATTGAGCAGAATCTCGCCGTATCGAGAACTTTGGGTTCTAGTTCTACTAC TTCTGATTCTAATAAAGTGATTATGGAGAAATTAAGCAGGGATTTGATTCAGGAGATACAGATCCTGGTCGACTCGGTCCGATTGATATGCGAATCGCCC GTCGATCTGAAGAGCAACAATCTGGTTTACGAAGTGGTGAAGTCGGTCGGGGAAGATTACAGATTAGTGCAGCGGGAGATTCTAGTTCGGGTTGGGGAAT TCAGAGACAGAATGCAGAGTTTGAGTTTCGCCGAGTTGACTCAGCTCTCGAGCGAGTTGCAGAGATTGCAGGACTCGCGTGATGGGGTTACTTCGCTGTT CATTAACGGGAAGAGGAACGATGCTCTGTGGGAAACGGTGGCGGATACGAAGGAGATTGCTAGAGCGACGATGATGAACAAGGATGAGATGAAAAAGTTA GTGACTTCGCCGGCGGCGGCGAGAAGCGGGTTTCCCGGTCGGGGCGGGTGGTTGGGTAGATTGGTTTTGAGTTGA
AA sequence Show only first row Show all	>Lus10023837 pacid=23160832 polypeptide=Lus10023837 locus=Lus10023837.g ID=Lus10023837.BGIv1.0 annot-version=v1.0 MVRHRNRLRFLVGILKDKSSLLKTLLLSTKRNTKLRLAILRATSHVPSTSPSNRSLSAVLSLGGEGSRRTAAACINSLMDRLHGSNNAHVALKCLLTLHA VVSRGSFILKDQLSGGPSPGRNFLNLRNFRDGSDPETWELSAWVRWYAAVIEQNLAVSRTLGSSSTTSDSNKVIMEKLSRDLIQEIQILVDSVRLICESP VDLKSNNLVYEVVKSVGEDYRLVQREILVRVGEFRDRMQSLSFAELTQLSSELQRLQDSRDGVTSLFINGKRNDALWETVADTKEIARATMMNKDEMKKL VTSPAAARSGFPGRGGWLGRLVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10023837 [exp]	0	1
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	1.0	0.9316
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	1.4	0.8951
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	4.2	0.8483
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	4.6	0.8573
AT4G36010			Pathogenesis-related thaumatin...		Lus10028448 [exp]	5.9	0.7997
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	9.5	0.8343
					Lus10018325 [exp]	9.6	0.8168
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	10.2	0.8558
AT3G09032			unknown protein		Lus10027777 [exp]	11.4	0.8293
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	13.4	0.8490

Compare expression of checked genes

Lus10023837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.