Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23460 783 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 719 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT1G31930 626 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G26300 167 / 4e-45 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT4G01090 49 / 1e-05 Protein of unknown function (DUF3133) (.1) AT3G61670 49 / 2e-05 Protein of unknown function (DUF3133) (.1) AT2G46380 48 / 4e-05 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021012 [exp] 1296 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 781 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 716 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10010421 [exp] 615 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 609 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10021013 [exp] 235 / 2e-72 AT4G34390 61 / 4e-11 extra-large GTP-binding protein 2 (.1) Lus10003115 [exp] 155 / 1e-40 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 152 / 2e-39 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10000742 [exp] 52 / 1e-06 AT4G37090 116 / 2e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G109400 [exp] 1006 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 956 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.007G035200 [exp] 809 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 801 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.012G042500 [exp] 663 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 643 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 636 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 631 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.006G219500 [exp] 159 / 4e-42 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 153 / 8e-40 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00503 [flax] [poplar] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10023838 pacid=23160665 polypeptide=Lus10023838 locus=Lus10023838.g ID=Lus10023838.BGIv1.0 annot-version=v1.0 ATGGCTGGGATGCTGAGGAAGGTTCTACCTAAGTCCAATGTGGATGGTGGTAGTGGTAGTGATGAAGCTGATGAAGAAGAGTACGGAAAGAAAGTCGAAT ACTCGTTTGCTGTCGAGTATTCTGGGCCTCCACTTCCTTATGACATCCCTAAAGTTGTGCCTGTTGAACTTCACAAGATTCCAATTGCTGCAACAATTGC CTCGGCTTCTCTATCGAAGGCTGCTGCTGTTCCTATCATCCATCCAATTGTGCCGGCCAAGTCTCGAATTCCAGACAAGGTTAATGGTGATGAGAGGCTG ATGAACAACGGTTGTGATGCTGCTGCTGCTCAAACATTGCCAGGTTGCTCAGAAATCGTGCAAGTACCGGATGATGATGACTATGCGAATCCAGGAGTCA GTGAATCGACAAAATCCGAATCCTTTTCGCGTTCTGTGTCATCTGAGATCTTCTCTGGCAATGAGGAGTATGGTGATGAAGGAGCAACAGCTGATCCTCA ACATGTGAGGAGACCGTCGGCTGTGACGTTTCGTGATCCTGACTCGGAGGATTTCTACGAATCCGAGGCTGAAAGTAGCAGCGTCCCCGAGAATAGGCCG GTGGCTGTAAGGCCGGGGAAGAAAGGGACTTGTTATCGATGCATGAAAGGAAGTAGATTTACTGATAAGGAGTGCTGCATTGTGTGTGGTGCAAAGTTTT GCTCTGGTTGTGTGCTGAGAGCAATGGGGTCTATGCCGGAAGGGCGAAAGTGTGTGACTTGCATTGGTCAAAGGATCGATGAGGCGAGGAGGAAGAAGCT AGGGAAAAGTTATAGAATGTTAAAGCAGTTACTGCCTGATTTGGAAGTTAAGAACATAATGGCTTCTGAAAGAAGTTGTCATGTGAATCAGTTACCGCCG GAGCTTGTGTATGTAAATGATCAGTTTCTTGATGAAGAGGAGATAGTGTTGTTGCAAGGATGTTCGAATCCACCGAGGAAGCTGAAGCCTGGGTACTATT GGTATGATAAAGTGGCTGGTTTGTGGGGGAAGGAAGGAAAGAAACCTTGCCAAATAATCAGTGATCAGTTGAACATTGGTGGTCACCTCCGACGAGATGC TAGCAAGGGAGACACCGGTATACTCGTGAACAACCGTGAAATAACTAAACCGGAGCTCTTGATGCTGCAGTTGCTAGGTGTGAAATGCGACGGAACGAGT AGCTTTTGGGTTAGTGCAGATGGTTCCTATCAGGAAGAGGGCATGAAGAATGTCAAAGGAAAAATATGGGACAAGCCTGGTGCAAAGGTAATATGTATGT TCTTGTCGTTGCCAACGCCTCCCGATTCGAGTAGCTCCGCGAGAAAAGAGCCAAATGGTGCAGCCATTCTCCCCAAGGTTCTTGAACAGAAAATGTTGGG AAAGCTTCTTCTAGTTGGTAACAGAAAGTCTGGTACCAGTACCATCTTCAAACAGGCAAAGATTGTCTACAACGTTCCTTTCTCTGAAGATGAGCGGCAA AGTATAAAGTCTGTAATCCAAAGTAATTTGTATGGATACATTGGTGTACTTCTAGAAGGACGTGAGCGTTTCGAGGAAGACAGTTTGATTCAAAGAGGGC AATGCAGTTCTTCAGGTCAGACTGATGCTAATACCATATACTCGATTGGTCCACGGCTGAAAGTATTCTCAGATTGGCTTCTCAAGGTCATGGTTTCGGG TAACTTGGAAACCATTTTCCCTGCTTCGACTCGCGAATATGGACCTTTCGTCGAGGAGCTATGGAAAGATGATGCCATTCAAGCCACATACAATAGAAGG GACGAAATACCGTCTCTTCCCAGAAATGCTACCTACTTCTTGGAACGGGCTGCTGAGATTGCAATGATGGACTATGAACCATCTGATATGGACATATTGT ATGCTGAAGGGATAACTTCATCAAGAGGGCTCTCTTCCATGGAGTTTTTGTTTCCACAGTCACCTCGAGATCTCTGTGATCACATTGGCTATCAGCATAA TCCATCACAAAGGTACCAGCTCATTAGAGCACATCCAAGAGTACTGGGAGGGAACTGCAAATGGCTGCAAATGTTCGAAGACGTCGACATGGTCTTATTC TGCGTTTCGTTGACTGACTACGATCAGTGCTCCGAAAACAGCGACGGAGTCATCACAAACAACATGATGGCCAGCAAGCAGCTATTTGAAAGCATAGTCA CCCATCCGAAATTTGAGGACAAGAAGTTCCTTCTCATACTGAACAAGTTCGATCTTCTAGAGGAGAAGATCGAGCGGGTCCCACTCACTCGATGCGAATG GTTCGAGGATTGGAATCCCGTGATCGGACACAATCCGGCCAGCAGCAGGAGCAGAGTCACCAACACTTCGTTGGCTCACCGTGCTTTCCAGTTCATTGCG ATGAAGTACAAGAGACTGTACACTTCTCTTGTCGATAAGAAGCTGTACGTGTCGCTGGTTACCGGGTTGGAAGGTGATCATGTGGACGAGGTTCTTCGAT ACGCGAGGGAGATTCTGAAATGGGACGAGGAATCTTTCGATGTTACGAATCATAACGAGATGTCTTCCACTAGCATCGAGGCTAGCACATCCGGATGA
AA sequence Show only first row Show all	>Lus10023838 pacid=23160665 polypeptide=Lus10023838 locus=Lus10023838.g ID=Lus10023838.BGIv1.0 annot-version=v1.0 MAGMLRKVLPKSNVDGGSGSDEADEEEYGKKVEYSFAVEYSGPPLPYDIPKVVPVELHKIPIAATIASASLSKAAAVPIIHPIVPAKSRIPDKVNGDERL MNNGCDAAAAQTLPGCSEIVQVPDDDDYANPGVSESTKSESFSRSVSSEIFSGNEEYGDEGATADPQHVRRPSAVTFRDPDSEDFYESEAESSSVPENRP VAVRPGKKGTCYRCMKGSRFTDKECCIVCGAKFCSGCVLRAMGSMPEGRKCVTCIGQRIDEARRKKLGKSYRMLKQLLPDLEVKNIMASERSCHVNQLPP ELVYVNDQFLDEEEIVLLQGCSNPPRKLKPGYYWYDKVAGLWGKEGKKPCQIISDQLNIGGHLRRDASKGDTGILVNNREITKPELLMLQLLGVKCDGTS SFWVSADGSYQEEGMKNVKGKIWDKPGAKVICMFLSLPTPPDSSSSARKEPNGAAILPKVLEQKMLGKLLLVGNRKSGTSTIFKQAKIVYNVPFSEDERQ SIKSVIQSNLYGYIGVLLEGRERFEEDSLIQRGQCSSSGQTDANTIYSIGPRLKVFSDWLLKVMVSGNLETIFPASTREYGPFVEELWKDDAIQATYNRR DEIPSLPRNATYFLERAAEIAMMDYEPSDMDILYAEGITSSRGLSSMEFLFPQSPRDLCDHIGYQHNPSQRYQLIRAHPRVLGGNCKWLQMFEDVDMVLF CVSLTDYDQCSENSDGVITNNMMASKQLFESIVTHPKFEDKKFLLILNKFDLLEEKIERVPLTRCEWFEDWNPVIGHNPASSRSRVTNTSLAHRAFQFIA MKYKRLYTSLVDKKLYVSLVTGLEGDHVDEVLRYAREILKWDEESFDVTNHNEMSSTSIEASTSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	2.2	0.8995
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	2.8	0.8923
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	4.2	0.8650
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	7.3	0.8407
AT1G76070			unknown protein		Lus10034552 [exp]	7.7	0.8404
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	8.1	0.8051
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	8.5	0.8518
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	8.8	0.8473
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	8.9	0.8556
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	8.9	0.8441

Compare expression of checked genes

Lus10023838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.