Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49470 240 / 2e-78 Family of unknown function (DUF716) (.1) AT1G55230 157 / 6e-46 Family of unknown function (DUF716) (.1) AT1G55240 144 / 4e-41 Family of unknown function (DUF716) (.1) AT5G19870 134 / 1e-37 Family of unknown function (DUF716) (.1) AT1G32120 85 / 4e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021008 [exp] 473 / 1e-170 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 130 / 2e-35 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10039191 [exp] 127 / 1e-34 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10014806 [exp] 86 / 3e-19 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 84 / 1e-18 AT1G32120 429 / 3e-142 unknown protein Lus10012588 [exp] 42 / 0.0004 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10041505 [exp] 41 / 0.0006 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108900 [exp] 323 / 4e-111 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 143 / 2e-40 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 140 / 2e-39 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 139 / 4e-39 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 137 / 2e-38 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.001G132800 [exp] 96 / 7e-23 AT1G32120 377 / 2e-122 unknown protein Potri.003G100700 [exp] 95 / 8e-23 AT1G32120 382 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10023842 pacid=23160782 polypeptide=Lus10023842 locus=Lus10023842.g ID=Lus10023842.BGIv1.0 annot-version=v1.0 ATGGGTAATTTCGTTGAGCACATCGTTCCTGGTGTAGCTCTATCTCTTCTTGGCTTATGGCACACCATCAACACCACCAGATCATACTGCAACAACAAAG AAAACTTCACAGTCAAGTTTTGGTACCCCTTATTGTACAATCCTTCCTCCAGGCTCAAACACCTCGAGCCTCTACTCATTCTATCCTTCTCGATACTCGC GCTCTTCGACCAAGTCTTTGACTTTCCTCACTTCCACTTCACCTTCCACCTCATAAAGCTAGAACACGCAACCATGTTCCTCCATCTTGCAGTCTTTGCA GGTTTCGCCCTCTGCACAGAGATCATAGCTCAATCGACATCCGAACTCCTGTCGAGTGTAACGGGCATACTTGCTGCTTCAGTTTTCAGCCAGGAGCTTT TCCTCCTCCATTTCCACTCAGCTGACCACGTCGGCCTCGAAGGCCACTACCACTGGCTCCTTCAGCTCATAATACTCGTCTCCCTCCTATCAGCTCTAGC TTCCACTTTTTCCCCCACCAGCTTCCCGGCAGCTCTCGTGCTTTCGGTTTCGGTGGTTTTCCAAGGGTGTTGGTTCATGAACATGGGGTGTATGCTGTGG CTTCCTCAGTTCACTCCTGAGGGGTGTTTCTTCAACAGCTCTCGTATGCATTCATCGGTCACATGTGGATCTCCTCGCGCAGATATTCGAGCTAGAGCGC TAGCCAACTTGCAATTCAGCTGGATACTCTCCGGGATCATGCTGTTGACGGGGTGTATTTGCCTGAAATCAGCTGGAAGATCGAACCGGAGGAGGCTGCA GTATGAGCAACTCAACAGCAGAGCCGGGGCAGAGTGTCCTGTCGCCATTATTGAAGGTTTCAAGCAAGTTGATCCTTGA
AA sequence Show only first row Show all	>Lus10023842 pacid=23160782 polypeptide=Lus10023842 locus=Lus10023842.g ID=Lus10023842.BGIv1.0 annot-version=v1.0 MGNFVEHIVPGVALSLLGLWHTINTTRSYCNNKENFTVKFWYPLLYNPSSRLKHLEPLLILSFSILALFDQVFDFPHFHFTFHLIKLEHATMFLHLAVFA GFALCTEIIAQSTSELLSSVTGILAASVFSQELFLLHFHSADHVGLEGHYHWLLQLIILVSLLSALASTFSPTSFPAALVLSVSVVFQGCWFMNMGCMLW LPQFTPEGCFFNSSRMHSSVTCGSPRADIRARALANLQFSWILSGIMLLTGCICLKSAGRSNRRRLQYEQLNSRAGAECPVAIIEGFKQVDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	0	1
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	3.5	0.8676
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	3.9	0.8722
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	5.8	0.8708
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	9.2	0.8571
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10000023 [exp]	11.5	0.8348
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	12.5	0.8633
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	13.0	0.8498
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10018211 [exp]	13.4	0.8445
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	14.9	0.8421
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10031529 [exp]	15.5	0.8403

Compare expression of checked genes

Lus10023842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.