Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 81 / 8e-17 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 67 / 6e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 65 / 5e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 50 / 3e-07 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021007 [exp] 363 / 5e-125 AT3G18990 87 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014528 [exp] 295 / 6e-97 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032159 [exp] 181 / 4e-53 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10019977 [exp] 143 / 2e-41 AT3G18990 41 / 7e-05 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10040408 [exp] 107 / 7e-28 ND 41 / 8e-05 Lus10010759 [exp] 85 / 4e-18 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 82 / 5e-18 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 80 / 1e-17 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 79 / 2e-17 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 95 / 2e-21 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 86 / 7e-18 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 77 / 6e-16 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 74 / 4e-14 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 73 / 5e-14 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 73 / 7e-14 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 66 / 1e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 62 / 3e-11 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 43 / 0.0002 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 44 / 0.0003 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10023843 pacid=23160655 polypeptide=Lus10023843 locus=Lus10023843.g ID=Lus10023843.BGIv1.0 annot-version=v1.0 ATGGCTTTCAACAACTGTTCCAAGCGTTTCTGGCAGATTGTCTATCCTGAAGACCTCGACGAGGGCAGATTGATGATTTCCAAGGACTTCGTGACGGAGT ATGGCCACCTACTCTCCGAAGAGGCGGTGCTGAAAGTATCGGATGGGGAAGTATGGAAGATCGGTCTGGCGAAGCAATACTTCCGCCGTGAAGAGAGAAT CTGGCTCAGTGCTGGATTCCGTCGTTTCCTCGAGTACTACTCCATTGACGTCGGTTACCTTCTGATATTCGAGTTCCGAGGCTCGTCTAGATTCCTGACT TCCGTTTTCGACCTCACCGCTTGTGAGATCGAATACCCTATCTCCTCCAGCAGCCCAGCTTCCGGTTCAGATTCCGATTTCGACTTCGACGACCCTCACA GAAGAAGAGGAAAAGGAGCAGCGGCCGCCAGCAATGCATCCGGCTCGCGGCAGAAACCGCAACAGGGACGGACTCCACACCACTTTGCCAACCTTAGTAT CTCGGATTCTGATTCCGACGTCCCTGGTTTCAGGAACGGAAGCAGAGGAAAAAGAGTTATCGCCTCTTCCTCCGAATCCGACTCAGAATCCGGTTCCGAT TCCGACAACGCAGATTTCAGGGGCAAAAGGAAAGGAAAACAACTCGTCGCTGCCGCGCGCAAAAACCACGGAAATGCATCAAGCTCGCGGCCCCAACAGC CTCCGAATTCCGCCGGAGTTTCCTTTGCCGAGGATTTATGGAGCAAACTGAAGAAATCAACAATAGTCAAAACCCAGGGGTTCCAATCCAAGTTCATGAC GCACTCCGCAGCGACCCAGAGAGCGATCCGGAGAGCCGTCGATAGCGATCCGAAGAACCCTTCGTTTCTGGTCGTCATCGGGAGATCCCATCTACAGTCA GGAAACATGTCCATTCCGGACAGGATCGCAGACGTACACCTGATGGAAAATTTGCCGAAGATAACGTTGCGTGTGGTCGACGGAGACGAGGGTGTGGTGG ACGAGAGGGAGGTTAAGCTTTTCGAGACGAAACACTACGGGAGGAAGTATATATGTGGGTTGATGTCGGCCTGCAAGAAACATGGGCTGGTAGCGGGAGA CGTCTGTCTGTTCGAGCTCGTCGAGCGGGAGACCAACCTCTTCCACGTTCGCATATTCCATAGTAGTTGA
AA sequence Show only first row Show all	>Lus10023843 pacid=23160655 polypeptide=Lus10023843 locus=Lus10023843.g ID=Lus10023843.BGIv1.0 annot-version=v1.0 MAFNNCSKRFWQIVYPEDLDEGRLMISKDFVTEYGHLLSEEAVLKVSDGEVWKIGLAKQYFRREERIWLSAGFRRFLEYYSIDVGYLLIFEFRGSSRFLT SVFDLTACEIEYPISSSSPASGSDSDFDFDDPHRRRGKGAAAASNASGSRQKPQQGRTPHHFANLSISDSDSDVPGFRNGSRGKRVIASSSESDSESGSD SDNADFRGKRKGKQLVAAARKNHGNASSSRPQQPPNSAGVSFAEDLWSKLKKSTIVKTQGFQSKFMTHSAATQRAIRRAVDSDPKNPSFLVVIGRSHLQS GNMSIPDRIADVHLMENLPKITLRVVDGDEGVVDEREVKLFETKHYGRKYICGLMSACKKHGLVAGDVCLFELVERETNLFHVRIFHSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023843 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006462 [exp]	6.1	0.8173
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	16.6	0.7900
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	19.0	0.7951
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042168 [exp]	20.7	0.7945
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	21.2	0.7898
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	25.0	0.7611
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	29.5	0.7798
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	31.5	0.7790
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10013042 [exp]	32.8	0.7839
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10032657 [exp]	38.1	0.7615

Compare expression of checked genes

Lus10023843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.