Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 169 / 1e-51 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G01580 95 / 3e-24 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 92 / 5e-23 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 81 / 6e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 50 / 3e-07 B3 REM5 transcriptional factor B3 family protein (.1) AT4G33280 50 / 3e-07 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G26680 49 / 5e-07 B3 REM17 transcriptional factor B3 family protein (.1) AT3G53310 49 / 5e-07 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G31690 48 / 1e-06 B3 REM9 Transcriptional factor B3 family protein (.1) AT2G24700 47 / 3e-06 B3 REM10 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012041 [exp] 268 / 5e-90 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 232 / 7e-76 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 94 / 5e-23 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 92 / 3e-22 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 89 / 4e-22 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 92 / 2e-21 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 91 / 2e-21 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 89 / 2e-21 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10008529 [exp] 89 / 2e-21 AT3G18990 87 / 8e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108500 [exp] 188 / 2e-58 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 165 / 1e-49 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 125 / 3e-34 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 123 / 2e-33 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 103 / 7e-26 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G230100 [exp] 97 / 2e-23 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 79 / 8e-18 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 79 / 6e-17 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 75 / 2e-16 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 61 / 4e-11 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10023844 pacid=23160822 polypeptide=Lus10023844 locus=Lus10023844.g ID=Lus10023844.BGIv1.0 annot-version=v1.0 ATGCCTGCTAGGCCTTACTTCCACAAGATCATCCTCCCCAGAACCCTCCATGACAGGAAGCTGAGGATCCCGGACAATTTCATCAAGAAATTCGCGAACG ACCTCACCCCACTGGTCAGGCTGACTGTCCCCGACGGTCATGTGTGGCGAATAGGGATAGTGAAAGCTGACGACAAGTTCTGGTTTCACGATGGATGGCA TGACTTTGTCGAGAGCTACTCGATTCGCGTTGGATACATGCTGATCTTCCGATACGAAGGAAACGCAATCTTCAATGTTCATATATTCAACCTTTCTGCC TCCGAGATAAACTACCAGACCAATTCTCTCAGTGGGAAAAGGTGTCTCCTTTTCGATGAATTGGAAGACGAGGACTCCGCCGAGTACTTGCAAAATACCG TGCCGTTGTACCAAGTTCCTTTCGCAATGAAAGGGAATAATCCGCAACTGAATCGAGCAAGTAACCCTCCGAATCCTGCAACTCAGCCTGCTGCTGTAGA TGTGAATCGTCAGTTTAATGCTTTCGATCAACGGAATGCTTCGGATGCACCGGTGAAAGTCCCCAAGAAACGCGGAAGGAAAAAGATAAAGCCTGATCCC GGTAAGTAA
AA sequence Show only first row Show all	>Lus10023844 pacid=23160822 polypeptide=Lus10023844 locus=Lus10023844.g ID=Lus10023844.BGIv1.0 annot-version=v1.0 MPARPYFHKIILPRTLHDRKLRIPDNFIKKFANDLTPLVRLTVPDGHVWRIGIVKADDKFWFHDGWHDFVESYSIRVGYMLIFRYEGNAIFNVHIFNLSA SEINYQTNSLSGKRCLLFDELEDEDSAEYLQNTVPLYQVPFAMKGNNPQLNRASNPPNPATQPAAVDVNRQFNAFDQRNASDAPVKVPKKRGRKKIKPDP GK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023844 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10024413 [exp]	4.9	0.7813
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	5.9	0.8123
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	9.8	0.7888
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	12.2	0.7903
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10027132 [exp]	15.5	0.7559
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	16.1	0.7590
AT4G15930			Dynein light chain type 1 fami...		Lus10006500 [exp]	18.2	0.7607
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	18.6	0.7764
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	18.6	0.7429
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	25.7	0.7484

Compare expression of checked genes

Lus10023844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.