Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44150 273 / 1e-92 unknown protein AT2G15910 264 / 1e-87 CSL zinc finger domain-containing protein (.1.2) AT3G11800 253 / 7e-85 unknown protein AT3G48630 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021005 [exp] 437 / 4e-158 AT3G44150 274 / 1e-93 unknown protein Lus10016181 [exp] 265 / 2e-89 AT3G44150 328 / 2e-114 unknown protein Lus10029366 [exp] 263 / 8e-89 AT3G44150 328 / 1e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146800 [exp] 293 / 1e-100 AT3G11800 271 / 5e-92 unknown protein Potri.016G068000 [exp] 278 / 1e-94 AT3G44150 342 / 4e-120 unknown protein Potri.006G201600 [exp] 274 / 2e-93 AT3G44150 330 / 2e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023845 pacid=23160677 polypeptide=Lus10023845 locus=Lus10023845.g ID=Lus10023845.BGIv1.0 annot-version=v1.0 ATGCGGGGACGTGAGAGGTCGAAAATGCCCTTGTCGACGACCACAACAATGGTAATGGTGTTGGTGATGTTGACCATGATGATGATGATCATTAGGGTGA ATGCAGCCGATGACAGCAACCCAGTGTTTGATCCATGCTCCGATACCACGGTGGCGAGATCGGACGGGTTCACTTTCGGCCTGGTGTTTTCGAGCAACAT TTCCTTCTTCACGGGCGAGGTCCAGCTCTCCCCATGCGACAAACGGCTTGCCTTGGCATCCAAGCATTCCCAGCTCGCCGTGTTTAGGCCGCAGGTCGAC GAGCTCTCGCTCCTCACCATCAGCAGCGACACGTTCGATCCGGCCAAGGCAGGCGGGTGCATGGTAGCTTTTGCTGGAAGGAACTTTGCAGCAAGGTCAA TGCCGACCCTGGTGACTGATGGTACTATGAGCATCACTAGCTTCACATTGGTTCTTGAGTTCCAGAAGGGTACCCTGGAAAACTTGTACTGGAAGAAATT CGGGTGCGAGTCGTGCCATGGCGAGTTTCGTTGCTTGAATGAGCAGGACTGTGCGATACCAAGAGCCAAGTGTAGGAGCCACGGCGGGGCCTACGACTGC GATTTGAACATACAGCTGGCGTTCTCAGGTACTGATAAGAACCTGGAGACTCTCAACTCCTGGTACGAGGTTTCCAGTCTCCGGCAGTACTCACTCTACG GCCTGTACTCGAATGTAAAGGACAATCTCTTCATGTAA
AA sequence Show only first row Show all	>Lus10023845 pacid=23160677 polypeptide=Lus10023845 locus=Lus10023845.g ID=Lus10023845.BGIv1.0 annot-version=v1.0 MRGRERSKMPLSTTTTMVMVLVMLTMMMMIIRVNAADDSNPVFDPCSDTTVARSDGFTFGLVFSSNISFFTGEVQLSPCDKRLALASKHSQLAVFRPQVD ELSLLTISSDTFDPAKAGGCMVAFAGRNFAARSMPTLVTDGTMSITSFTLVLEFQKGTLENLYWKKFGCESCHGEFRCLNEQDCAIPRAKCRSHGGAYDC DLNIQLAFSGTDKNLETLNSWYEVSSLRQYSLYGLYSNVKDNLFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44150			unknown protein		Lus10023845 [exp]	0	1
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	2.0	0.7421
AT5G49420	MADS		MADS-box transcription factor ...		Lus10011456 [exp]	104.6	0.6733
AT3G49601			unknown protein		Lus10008501 [exp]	112.4	0.6842
AT1G72020			unknown protein		Lus10006080 [exp]	115.4	0.6856
AT3G18790			unknown protein		Lus10008882 [exp]	127.5	0.5815
					Lus10019330 [exp]	201.3	0.6281

Compare expression of checked genes

Lus10023845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.