Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23530 234 / 4e-73 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 226 / 3e-71 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G67780 105 / 2e-25 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67270 102 / 3e-24 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT5G38690 97 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G09060 54 / 6e-08 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 43 / 0.0002 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) AT1G11950 43 / 0.0003 Transcription factor jumonji (jmjC) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019647 [exp] 209 / 3e-64 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10000845 [exp] 207 / 1e-63 AT2G23530 303 / 8e-98 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10021004 [exp] 189 / 2e-60 AT4G37110 110 / 7e-29 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10033539 [exp] 100 / 5e-23 AT5G38690 405 / 2e-134 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10017575 [exp] 98 / 2e-22 AT5G38690 409 / 8e-137 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10017092 [exp] 50 / 1e-06 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10037812 [exp] 50 / 1e-06 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108400 [exp] 272 / 2e-89 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.007G036200 [exp] 256 / 1e-80 AT2G23530 320 / 6e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.006G257400 [exp] 100 / 2e-23 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.018G024400 [exp] 95 / 2e-21 AT5G38690 271 / 1e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.012G044400 [exp] 76 / 9e-16 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.013G019000 [exp] 54 / 8e-08 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [flax] [poplar] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Lus10023846 pacid=23160801 polypeptide=Lus10023846 locus=Lus10023846.g ID=Lus10023846.BGIv1.0 annot-version=v1.0 ATGGTGTCGGCGACGAGGCGACGAAGAGCCGGAATCGGCGCTGCCACCGCCGGAGAAGAAGCAGTTGTAGCGATTCCGAGTCCGGACCAACCTCCAGCGT ACGAGGATATGAGAGAACAGAGAATCAAAGAGAACAAGGAGAGACTGGAGAAATTAGGGCTTCTCGACTTATCTCTCAAGCTCAAGGCCACCGCCAACAA GAAAGCCTCAAAAAGAAACGCTCCCTCTGCCGCTACCAAATCTCGCACAGTCCCTTCTGGTTCTGAATCGCCGAGGCGCTCATCCAGGGTGAAGACTTTA ACTCCAGTGAACTACACAGAGATGGTGACTAAAAAGAAGAGGGAATCCCGGAAGGACTTGGAGATCCGTTTGCAAGAAGGGACACAGCCGGAGGTTTACA CTGAAGAGCATGAGAAGCTTTTGGGGAGTTGTGATGAGGAGTGGGTTTTGGGTGTGGATGGATATAGTGAAGATGGGAAGCGCTTACTTGATCCAGTGGA TGGGCAAACCTGTCACCAGTGCAGGCAAAAGGCGCTTGGTCTTCACACAAGTTGCTGCAAATGTGAGTTGGTCCAGGGTCAGTTCTGTGGAGATTGCCTT TACATGAGATACGGAGAGAATGTGACCGAAGTGAACAAGAATCCAGATTGGATTTGCCCGACTTGTCGGGGAATCTGTAATTGCAGTCTTTGCAGGAAAG GAAAGGGTTGGTTACCTACGGGTAATCTTTATAGGAAGGTTACTAAGCTCGGCTTCAAGTCCGTGGCACATTTTCTCATACAAACCTGCCGTGCTAAGTC TACCCCAGAAGACCCACCTGCAACTGCTGAAGATCTCGTCCCTAAACTTCTCGATGCATCTGGTGAAGATGTCGAAGTCGGTACAGGAGACGGAGATGTC TCAATTGGCGTTCATGCTGCTGTTGACAAAGTGAAATAA
AA sequence Show only first row Show all	>Lus10023846 pacid=23160801 polypeptide=Lus10023846 locus=Lus10023846.g ID=Lus10023846.BGIv1.0 annot-version=v1.0 MVSATRRRRAGIGAATAGEEAVVAIPSPDQPPAYEDMREQRIKENKERLEKLGLLDLSLKLKATANKKASKRNAPSAATKSRTVPSGSESPRRSSRVKTL TPVNYTEMVTKKKRESRKDLEIRLQEGTQPEVYTEEHEKLLGSCDEEWVLGVDGYSEDGKRLLDPVDGQTCHQCRQKALGLHTSCCKCELVQGQFCGDCL YMRYGENVTEVNKNPDWICPTCRGICNCSLCRKGKGWLPTGNLYRKVTKLGFKSVAHFLIQTCRAKSTPEDPPATAEDLVPKLLDASGEDVEVGTGDGDV SIGVHAAVDKVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23530			Zinc-finger domain of monoamin...		Lus10023846 [exp]	0	1
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	1.7	0.8381
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	4.6	0.7746
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10011168 [exp]	5.2	0.8103
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10040299 [exp]	6.8	0.8226
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	23.4	0.7351
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	26.6	0.7321
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	33.0	0.7673
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Lus10002619 [exp]	67.1	0.7200
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	75.4	0.6611
AT5G59350			unknown protein		Lus10005455 [exp]	79.6	0.6599

Compare expression of checked genes

Lus10023846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.