Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15900 518 / 3e-169 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) AT1G15240 241 / 1e-66 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027939 [exp] 785 / 0 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 560 / 0 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10036765 [exp] 246 / 2e-76 ND / Lus10012043 [exp] 213 / 7e-62 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10025785 [exp] 139 / 2e-33 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10035877 [exp] 136 / 2e-32 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G146600 [exp] 665 / 0 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.009G108300 [exp] 649 / 0 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.001G183100 [exp] 229 / 4e-62 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.003G053200 [exp] 213 / 5e-57 AT1G15240 986 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02194 [flax] [poplar] PXA PXA domain PF00787 [flax] [poplar] PX PX domain PF08628 [flax] [poplar] Nexin_C Sorting nexin C terminal
Representative CDS sequence Show only first row Show all	>Lus10023847 pacid=23160724 polypeptide=Lus10023847 locus=Lus10023847.g ID=Lus10023847.BGIv1.0 annot-version=v1.0 ATGTGGATTAACCTCCCCATATCAATCCTGCTGGCGTCTGCACTGCGGATTCTGGCTAACGAAGTAGAGTTCTACTGGAAGCCACGCAGCTTGGTCCGTC CACGAACGTATGTGTCTCACTTGGAGAAGAAGCAGTTATCTGCGAATGATTTACGGCTTAATTCTGCACCGCCACCGTCACGATGGAGGAGGAAGATCGA TTCGTCTGTGGTGGAGGCTTCGGTCAATGGCTTTATTGACAAGATAATGAAGGACTTTGTGGTGGATCTCTGGTATTCCGAAATTACGCCTGACAAGGAG GCCCCTGAGTTGATCCGTGCAGTGATAATGGATGCTCTTGGTGAGATATCGGGAAGGGTTAAAGAGATTAACCTTGTTGACTTGTTAACAAGGTATATCA ATGAGGTGATTGAATATATCTTGCTTGCCGTTATAGATAATGACCCAAAGGACACAGGAAATGATCAGTCTGCGAGGGCTGCAAATAGTGGCCCATCTGT CTTGCAGAAACGTTCTTCAGAGAATCCTCCCAGTCCTATAAGTTTAGCTAAGAATGAAAACCGAAAAGATTCTTCAATGGATGACGGTGTAGACAGTTCA GACTCTCCACCCCAGGCTGATTGGGGAAGATTGCTAGAGGCTGCAACACAGAGAAGAACTGAAGTGCTCACACCTCAAAATCTTGAGAATATGTGGACGA AAGGAAGGAATTATAAGAAAAAAGAGAACAAGATTGCTAAAAAAGCAGGCAGCAGGAAGGCCAAGTCAAAAAGTTCTTCACTAAGTATCACTGATTTTTC TCCTAGTATGGGAAAAGAATCACAATCTGCTGGTACTGTGATTCCCACAAGAACACATGGAAAAGTTTCCGGGTTCCTAAAACCTCAAGCAAGTGTTGAT AATGCGTTAGTCGATGAGAAGAAAAATGAAAAACATATAGTAGCAGGTCAGAGTAGTGAGTACTTTGCAGGAGTTGATCCTATTGATGAATTTGAAACTA CTACCAAGCAGTCAATGAATGAAAATGTGGGCAAGCTTAAGCGGTCAAATAGCACGTCAGCTTTGAGAAATCAGCCTGAAAAGAAGAGGGCATTAGAACC GGAACATGGAAGTTCCATTATCTCAGAGTACTACAGTGCAGATTTTGCTGGGCATGCTTCAGATTCTGCTGTTAAATTCATACCTGATGAAGTATTGCAC ATTGACTCAACTAATGTTCCAAAGCTGAGGTCTCGGGTTATGGGAGCTTACTTTGAGAAGCTTGGGTCAAAGTCATTTGCCGTTTATTCAATTGCAGTAA CGGATGCGGATAATAGAACTTGGTTTGTGAAAAGAAGATATAGTAATTTTGAGAGGTTGCACAGACATCTTAAAGACATTCCTAATTACAACTTGCATTT GCCTCCCAAAAGGATCTTCTCGTCTAGCACAGAGGATGCTTTTGTACATGAACGTTGTATTCAGCTTGATAAGTATCTCCAGGATCTATTGTCTATAGCT AATGTGGCCGAGCAGCATGAAGTATGGGATTTTCTAAATGCTTCCTCTAAGATTTACTCTTTTGGGAAATCTTCTTCTGTAATGAGAACCCTGGCAGTCA ACGTGGATGATGCTGTGGACGACATTGTGCGGCAATTTAAAGGGGTTTCAGGTGGCTTGATGCGTAAAGTTGCTGGTCCGTCTCCACTGATTGGTGATAC CAGCACTTCAAGCTACGGTGGTGATTTCACTTGGAATGTAGGTCAGATCGATAATTCTGTACATAGGCAAGATACAATGGGTACTGAAAACAGCTCTTCT GACAATGATGGAAGTAATCAACAAGCGGACGTAGGACCCAGTGCACAAGCTAGTGGTTGGCATTCAGATAAAGATGTGGGCTCAAGGTCGTTTCCACGCC GAGCTATCAAACGGGATGAGAGCTCCAGGAGCTTAAATTTAAAGCAAACTGACAACTGGCTCACAGAACCTGGTGGTGACAATCGATGTCAGCCTTCGGC AGTTAGTTCTGCTATAAGCTCAACCCGTCCAGAGGATCCAGTTGGTATGCCACCTGAGTGGACTCCACCTAATGTAAGTGTGCCCCTGTTGAATCTAGTT GACAAGGTGTTTCAGCTAAACAGAAGAGGCTGGCTGAGGAGACAGGTGTTTTGGATATCCAAGCAGATTGTGCAGTTGATAATGGAAGATGCCATCGATG ACTGGCTCTTGAGACAGATCTATTGGCTCCGAAGAGAGGATACTATAGCATTTGGCATCCGATGGGTCCAAGATGTTCTATGGCCGGATGGAACTTTCTT TACAAGAATTGGCGTTGCTCAAACCAAACCCGACGTACCTCAACAAAATCCGAATGCTTTTCATCTAGGTCAGTTTGGTGGCAGCAGCAGCAGCGAGGCG TCTAAGCAAAGTTCCTTTGAGGAACAGCTTGAAGCTTCTCGTAGAGCAAACTATATCAGAAAAACACTGTTTGGTGAGAATACTAAATTCTTCAGTCTTT GTTTCGCCTTTCTTTGTGTTTCTAGTTCTGGTGAGAAGTCTACAATCTGCATCAAGCAGCTAGCCTACGCAATCCTCGAGCTCGTACTCGTGACGGTCTT CCCAGAGCTCCGGGATCTTCTAAGGGAACTCCACGACAAGTATCCAGTCCCAGCCCCCGCATAG
AA sequence Show only first row Show all	>Lus10023847 pacid=23160724 polypeptide=Lus10023847 locus=Lus10023847.g ID=Lus10023847.BGIv1.0 annot-version=v1.0 MWINLPISILLASALRILANEVEFYWKPRSLVRPRTYVSHLEKKQLSANDLRLNSAPPPSRWRRKIDSSVVEASVNGFIDKIMKDFVVDLWYSEITPDKE APELIRAVIMDALGEISGRVKEINLVDLLTRYINEVIEYILLAVIDNDPKDTGNDQSARAANSGPSVLQKRSSENPPSPISLAKNENRKDSSMDDGVDSS DSPPQADWGRLLEAATQRRTEVLTPQNLENMWTKGRNYKKKENKIAKKAGSRKAKSKSSSLSITDFSPSMGKESQSAGTVIPTRTHGKVSGFLKPQASVD NALVDEKKNEKHIVAGQSSEYFAGVDPIDEFETTTKQSMNENVGKLKRSNSTSALRNQPEKKRALEPEHGSSIISEYYSADFAGHASDSAVKFIPDEVLH IDSTNVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDADNRTWFVKRRYSNFERLHRHLKDIPNYNLHLPPKRIFSSSTEDAFVHERCIQLDKYLQDLLSIA NVAEQHEVWDFLNASSKIYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSGGLMRKVAGPSPLIGDTSTSSYGGDFTWNVGQIDNSVHRQDTMGTENSSS DNDGSNQQADVGPSAQASGWHSDKDVGSRSFPRRAIKRDESSRSLNLKQTDNWLTEPGGDNRCQPSAVSSAISSTRPEDPVGMPPEWTPPNVSVPLLNLV DKVFQLNRRGWLRRQVFWISKQIVQLIMEDAIDDWLLRQIYWLRREDTIAFGIRWVQDVLWPDGTFFTRIGVAQTKPDVPQQNPNAFHLGQFGGSSSSEA SKQSSFEEQLEASRRANYIRKTLFGENTKFFSLCFAFLCVSSSGEKSTICIKQLAYAILELVLVTVFPELRDLLRELHDKYPVPAPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10023051 [exp]	2.4	0.8740
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	2.4	0.8792
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	2.6	0.8895
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	8.4	0.8874
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	8.8	0.8639
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	8.9	0.8768
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	11.0	0.8769
AT5G15080			Protein kinase superfamily pro...		Lus10005255 [exp]	11.7	0.8701
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	14.5	0.8312
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	14.7	0.8236

Compare expression of checked genes

Lus10023847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.