Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79620 414 / 2e-136 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 369 / 3e-119 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 354 / 2e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 354 / 1e-113 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 275 / 1e-83 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 268 / 4e-81 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 265 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 249 / 6e-76 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G53590 247 / 2e-74 Leucine-rich repeat protein kinase family protein (.1) AT1G10620 242 / 4e-73 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021003 [exp] 660 / 0 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 390 / 9e-127 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 290 / 1e-89 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 284 / 5e-87 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 284 / 8e-87 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 276 / 3e-84 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 271 / 3e-82 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 264 / 1e-79 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013014 [exp] 243 / 3e-76 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G144100 [exp] 453 / 2e-151 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 438 / 2e-145 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 388 / 2e-126 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 386 / 1e-125 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 379 / 2e-123 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231525 [exp] 337 / 2e-114 AT5G49760 343 / 3e-111 Leucine-rich repeat protein kinase family protein (.1) Potri.003G046450 [exp] 350 / 1e-112 AT5G49760 865 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 347 / 6e-111 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 342 / 4e-109 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 340 / 7e-109 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023848 pacid=23160807 polypeptide=Lus10023848 locus=Lus10023848.g ID=Lus10023848.BGIv1.0 annot-version=v1.0 ATGATTTGCAACACTATAGCACTAGAATCAATAAGATTGAGCAAGCAAACTTTATCCTCTCTGGTGTTAACTCTGTCATGCAGCTTCTTGGGCGGCAGCA AGCCGAAAGGATCACAGTGGTGGATCAGGGCAATCACCAGAGGTAGTAAACCATTTTCCTGGTCTGGTTATCCGCAGGTGTACAGAGGAATGCTTTCTGA TGGACAGCTTGTGGCAATCAAACGAGCACGACAAGGATCCCTGCAAGGCGGGCAGGAGTTCAAAACTGAGATCGAGTTGCTGTCAAGAGTACACCACAAA AATCTCTTAGCCCTCATTGGATTCTGTTTCGAACAAGGAGAACAGATGCTAGTGTACGAGTTCATGCCCAATGGAAGTCTCAAGGAAAGTTTGACAGGTA AATCAGGTATTCATCTTGACTGGAGAAGGAGGCTCCGGATTGCCCTTGGATCAGCTAGAGGACTTGCGTACCTTCACGAGCTTGCAAACCCTCCGATCAT CCACAGAGACATCAAGTCCACCAATATCCTCTTGGATGAAAACTTGAGTGCCAAGGTTGCTGACTTTGGCTTGTCCAAGCTTGTCTCTGATAGCACAAAA GGCCATGTTTCTACTCAAGTTAAAGGCACCTTGGGATACCTGGATCCAGAATACTACATGTCACAGCAGCTGACGGAGAAGAGCGACGTCTACAGTTTCG GAGTTGTGGTGCTGGAACTGGTGACGGCGAAGCAGCCGATCGAGAAAGGGAAATACATCGTCCGCCAAGTGCGGATGAAGATGATCCCGGAAGCTGATGC GGAGGCGGAGGAAGAAGATCAGTACTACTGCGGACTCAAGGAAATGATCGATCCGACGATCGTCGCGGAGGTTGCGACGGCAGGCACGACTCTCCGACGG GTCCTCGACCTGGCGATGCAGTGCGTGGAAGAATCGGCAGGGGACCGGCCAACAATGAGCCAGGTGGTGAAGACGATCGAGGCGATTCTGCAGGAGGAAG GCGTTAATGGTAACTCCACCTCCGCTTCCTCGTCGGCGACGGACTTCGGGATCCATTGCCTGAAAGGAGGAGGAGGAGGCGGTACTCTGAAGCATCCGTA CTGCGGGTCCGGCGATGTATGTGGTGCTACTAATAATACAAAAGGCAGCGGAGGGAAGGTTAACGGTAACGAGCAGTGCGATGCGTTCGATTACAGTGGT GGCTATGGGATTTCGACCACGGTGGAACCTAAGTAG
AA sequence Show only first row Show all	>Lus10023848 pacid=23160807 polypeptide=Lus10023848 locus=Lus10023848.g ID=Lus10023848.BGIv1.0 annot-version=v1.0 MICNTIALESIRLSKQTLSSLVLTLSCSFLGGSKPKGSQWWIRAITRGSKPFSWSGYPQVYRGMLSDGQLVAIKRARQGSLQGGQEFKTEIELLSRVHHK NLLALIGFCFEQGEQMLVYEFMPNGSLKESLTGKSGIHLDWRRRLRIALGSARGLAYLHELANPPIIHRDIKSTNILLDENLSAKVADFGLSKLVSDSTK GHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVVLELVTAKQPIEKGKYIVRQVRMKMIPEADAEAEEEDQYYCGLKEMIDPTIVAEVATAGTTLRR VLDLAMQCVEESAGDRPTMSQVVKTIEAILQEEGVNGNSTSASSSATDFGIHCLKGGGGGGTLKHPYCGSGDVCGATNNTKGSGGKVNGNEQCDAFDYSG GYGISTTVEPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	1.4	0.9873
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	1.4	0.9881
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	4.0	0.9788
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	5.5	0.9815
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	5.5	0.9730
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	5.9	0.9760
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	6.7	0.9695
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	7.4	0.9783
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	7.5	0.9745
AT3G23200			Uncharacterised protein family...		Lus10022188 [exp]	7.7	0.9717

Compare expression of checked genes

Lus10023848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.