Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79620 674 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 348 / 3e-109 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 288 / 1e-86 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 260 / 4e-80 Leucine-rich repeat (LRR) family protein (.1) AT5G49780 253 / 2e-74 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 122 / 8e-29 Leucine-rich repeat protein kinase family protein (.1) AT3G51740 109 / 7e-25 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT5G63930 104 / 4e-23 Leucine-rich repeat protein kinase family protein (.1) AT3G11080 102 / 2e-22 AtRLP35 receptor like protein 35 (.1) AT2G33170 102 / 2e-22 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007587 [exp] 352 / 8e-111 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 344 / 4e-107 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 120 / 3e-28 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019035 [exp] 117 / 4e-27 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 116 / 5e-27 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10034445 [exp] 115 / 8e-27 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005017 [exp] 110 / 6e-25 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10037705 [exp] 100 / 1e-22 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10036242 [exp] 102 / 3e-22 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G144100 [exp] 684 / 0 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 652 / 0 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G125600 [exp] 414 / 8e-141 AT1G79620 448 / 4e-149 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 392 / 1e-125 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 374 / 1e-118 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 348 / 2e-109 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 314 / 3e-96 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 302 / 6e-92 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 301 / 9e-92 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 299 / 3e-91 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023849 pacid=23160799 polypeptide=Lus10023849 locus=Lus10023849.g ID=Lus10023849.BGIv1.0 annot-version=v1.0 ATGAGGGGATTGCTTACTTTTGTTATGTTCTTCAGTGCAGCAGTTCATGTCAGTTTATCTGCCACAGACCCTCGTGACGGTGCAGCGCTGCAATCGTTAA AAGAGATATGGAGGAACCTTCCGCCCAGCTGGACACAGTCAGATGATCCATGCGGATCGTGGGAAGGAGTCACCTGCAAAAACTCAAGAGTTTCTGCTTT GGGTTTGTCTAGCATGGGTCTCAAGGGGAAGTTGAGTGGTGACATTGGAGGGCTAACTGAACTAAGATCCTTGGACTTGTCGTATAACCGAGACCTGGTA GGGCCCTTAACCCCGCGGTTAGGCGATCTGCAGAATTTGAACATCTTGTACTGTATCATTCCTGCAGCCAGTTTTCTCTACATGTTTCTGATGATCATTC GAATCTTGGTGGGCTGTGGCTTCAGTGGTGGCATTCCAGATGAGTTGGGGAGTCTTTCTGAACTATCCTTCTTGGCTCTCAACTCCAATAACTTGACAGG CAGAATCCCACCATCCATTGGCAATCTCTCCAAGCTTTACTGGCTGGACCTGGCTGATAATCAACTGACAGGACCTCTCCCCGTTTCCGCACCTGGCACT CCAGGCTTGGATCTCCTACTCAAAGCGAAGCACTTCCATTTCAACAAGAACCAGCTATCAGGTACAATTCCTCCCAAGCTTTTCCGGCCAGATATGGTGC TGATACATGTCCGACTGGATAGAAATGCTTTAACAGGAAGGATCCCCTCAAATTTGAACAACCTCCTGAATATCAATGAACTGAATTTGGCGCACAATAG ATTGACAGGCTCCTTGCCGAATTTAACTGGAATGAACAACCTCAATTACTTAGACCTCAGCAGCAACTCTTTTGAACCCTCAGAAGCTCCTACTTGGTTC TCCACCTTGCCATCTCTTACCACTTTGGTTATGGAACACGGATCACTTCAAGGACCTCTGCCACCAAAGGTCTTTAGTTTCCCACAAATCCAGCAAGTGT TACTGAGTAACAACGCCTTTAACGGCACATTAACAATGGGCGATAACATTAGTCCACAGCTTGAGCTCGTTGATTTGCAGAACAACCAGATTTCCTCTGC AACACTAACAGCTGGGTACACCAACACATTAATACTCGTTGGAAACCCGGTCTGCACGGCTCTGTCCAACACTAACTACTGCCAAATCCAGAGGCAACAG TCCTCCAAAGTGTACTCCACCAGCTTGGCTAACTGCGGGACCAAACTCTGCACAGCTGACCAAAAACTCAGCCCTCAGAGCTGCGAATGTGCATACCCAT ACGAAGGCACCTTATACTTCAGGGGCCCTTCCTTCAGGGATCTGACAGATGTGAACACGTTTCATGCCCTGGAAATGAGCCTCTGGGTGAAGCTAGGATT AACCCCTGGATCTGTCTCGCTTCAGAACCCAATTTTCAACTCTGATGATTACCTTCAGGTCCAGCTTGGTCTCTTCCCTCCTACCTCAGCTGGAAAGTAC TTCAACAGATCAGAAATCCAGAGAATTGGATTTGACTTGAGCAATCAGACCTACAAGCTCCATCGTCAGAGGCGTTATAGCTGGGATAGCAAGTGGTTGT GCAGTCCTGGTTCTGTGCCTAGTTGGTGTAGCCATTTATGCCATTTGGCAGAAGAAACGTGCAGAAAAGGCCATTGTGTTTAG
AA sequence Show only first row Show all	>Lus10023849 pacid=23160799 polypeptide=Lus10023849 locus=Lus10023849.g ID=Lus10023849.BGIv1.0 annot-version=v1.0 MRGLLTFVMFFSAAVHVSLSATDPRDGAALQSLKEIWRNLPPSWTQSDDPCGSWEGVTCKNSRVSALGLSSMGLKGKLSGDIGGLTELRSLDLSYNRDLV GPLTPRLGDLQNLNILYCIIPAASFLYMFLMIIRILVGCGFSGGIPDELGSLSELSFLALNSNNLTGRIPPSIGNLSKLYWLDLADNQLTGPLPVSAPGT PGLDLLLKAKHFHFNKNQLSGTIPPKLFRPDMVLIHVRLDRNALTGRIPSNLNNLLNINELNLAHNRLTGSLPNLTGMNNLNYLDLSSNSFEPSEAPTWF STLPSLTTLVMEHGSLQGPLPPKVFSFPQIQQVLLSNNAFNGTLTMGDNISPQLELVDLQNNQISSATLTAGYTNTLILVGNPVCTALSNTNYCQIQRQQ SSKVYSTSLANCGTKLCTADQKLSPQSCECAYPYEGTLYFRGPSFRDLTDVNTFHALEMSLWVKLGLTPGSVSLQNPIFNSDDYLQVQLGLFPPTSAGKY FNRSEIQRIGFDLSNQTYKLHRQRRYSWDSKWLCSPGSVPSWCSHLCHLAEETCRKGHCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	0	1
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	1.0	0.9866
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	1.4	0.9774
					Lus10040842 [exp]	3.0	0.9706
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	4.5	0.9534
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	4.7	0.9395
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10021800 [exp]	5.5	0.9281
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	5.7	0.9612
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	7.2	0.9381
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	8.2	0.9271
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	8.9	0.9469

Compare expression of checked genes

Lus10023849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.