Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19000 474 / 9e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G19010 455 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G10500 208 / 2e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 208 / 2e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G21420 208 / 2e-64 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 207 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 203 / 5e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 199 / 6e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 195 / 2e-59 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 191 / 6e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020999 [exp] 660 / 0 AT3G19000 473 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10021002 [exp] 417 / 4e-146 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004245 [exp] 303 / 2e-102 AT3G19010 277 / 2e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10023850 [exp] 243 / 3e-80 AT3G19000 225 / 4e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10042155 [exp] 227 / 2e-73 AT3G19000 219 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 211 / 2e-65 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 206 / 3e-63 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 204 / 7e-63 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 203 / 5e-62 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G107600 [exp] 528 / 0 AT3G19000 459 / 4e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G107550 [exp] 524 / 0 AT3G19000 452 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146000 [exp] 429 / 7e-151 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.004G146100 [exp] 421 / 2e-147 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G023600 [exp] 213 / 3e-66 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 209 / 1e-64 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 208 / 1e-64 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 204 / 7e-63 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 202 / 6e-62 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 200 / 2e-61 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023851 pacid=23160705 polypeptide=Lus10023851 locus=Lus10023851.g ID=Lus10023851.BGIv1.0 annot-version=v1.0 ATGGTGGAAATCGATCCATCTTTCATCCAAGAAGCTGATCACAGACCACACCCAAACCACACAGAAGCGAAATCGACTGCAAATGAAATCCCAGTAGTCG ACCTCTCTTCTCCAGCCGAATCCCTAGTTTCTCAGATTGGGGACGCCTGTGAGAAATGGGGATTCTTTCAGGTGATCAACCATGGAGTCCCGCTGGAGCT GGTGCGCAGCATGAAGAAAGTTGGGAAAGAGTTCTTCGACTTGGCCATGGAAGAGAAGAAGAAAGTGAAGAGGGATGAAGTTCATCCCATGGGGTATCAC GACAGCGAGCACACCAAGAACGTTCGGGACTGGAAGGAAGTCTTCGATTTCTTGGTGGTTGATCCGACTTTCGTTCCAGCTACTGAAGTTGCTGAGGATT TGGAGCTCAGAGAATTGACTAATCAGTGGCCTCAGATGCCTGCTGATTTCAGGGAGGTGTGCGAGGAATACAACAGAGAAGTTGAAAAGCTAGCATTCAA GCTTCTTGAACTGATTTCCCTGAGCTTGGGCGTGCCTGCTGATAAACTGAGCAGCTACTTCAAGGACCAAATCAGCTTTTCAAGGTTCAACCACTACCCG CCATGTCCAGCTCCGGAGCTAGCTCTCGGAGTTGGAAGGCACAAGGACGGCGGTGCCTTAACCGTGCTAGCTCAAGACGACGTAGGAGGGCTGGAAATCC GCGAGAGAAGATCCGGGGAATGGATCCCTGTCAAGCCTGTTGCTGATGCATTCATCATCAACATTGGCAACTGTATGCAGGTGTGGAGCAATGACAAGTA CTGGAGTGCAGAGCATAGAGTTGTGGTGAACTCCAAAAGGGAAAGGTTTTCAATACCATTCTTCTTCTTCCCTTCACACTATATCCAGATCAAGCCTATG GATGAGCTAGTGAATGATGAAAACCCTCCCAAGTACAAGGAGTTCAACTGGGGGAAGTTCTTCACTTCCCGAAACCGCAGCGACTTCGCGAAGCGCGAGG TCGAGAACATCCAAATCGACCATTTCAAGGTGTCAGACTGA
AA sequence Show only first row Show all	>Lus10023851 pacid=23160705 polypeptide=Lus10023851 locus=Lus10023851.g ID=Lus10023851.BGIv1.0 annot-version=v1.0 MVEIDPSFIQEADHRPHPNHTEAKSTANEIPVVDLSSPAESLVSQIGDACEKWGFFQVINHGVPLELVRSMKKVGKEFFDLAMEEKKKVKRDEVHPMGYH DSEHTKNVRDWKEVFDFLVVDPTFVPATEVAEDLELRELTNQWPQMPADFREVCEEYNREVEKLAFKLLELISLSLGVPADKLSSYFKDQISFSRFNHYP PCPAPELALGVGRHKDGGALTVLAQDDVGGLEIRERRSGEWIPVKPVADAFIINIGNCMQVWSNDKYWSAEHRVVVNSKRERFSIPFFFFPSHYIQIKPM DELVNDENPPKYKEFNWGKFFTSRNRSDFAKREVENIQIDHFKVSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	0	1
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	1.7	0.9398
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	2.0	0.9265
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	3.5	0.8937
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	3.5	0.9196
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	4.9	0.8825
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	5.5	0.8933
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10010948 [exp]	6.3	0.8829
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10036754 [exp]	8.2	0.8725
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	8.8	0.8883
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	8.9	0.8635

Compare expression of checked genes

Lus10023851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.