Plant FIBer expression Database

Lus10023852 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15860 531 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021000
[exp]
956 / 0 AT2G15860 539 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G107800
[exp]
664 / 0 AT2G15860 562 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10023852 pacid=23160732 polypeptide=Lus10023852 locus=Lus10023852.g ID=Lus10023852.BGIv1.0 annot-version=v1.0
ATGGAGGATAAGTCCGATGACAAGACGAAGAACACGCCACCGACAAATGAGGCTATGGAGTCTCGCCAGAAAGAAGAGCCGGATCAAGAAGTGAAGAGCA
GCGGAGCTGGCGGAGGAGGAGGAGGATGGGGAGGTTGGGGAGGTTTCTCGCCTTTCACTGTCCTCTCAGATCTCCAGAAAGCCGCTGAAGAGATCTCTCG
CAATGCTGCTGAGGCTGCAGAGAAGGCTGCGAAACGCATTGCAGATATAAACCTCGCCGAGGACTCGGAATCCTCCAAGGGGGAGGATGATCGAGAAGAA
GGTGCTAGTGATAAGGAAACTGACGATGAGAGTGCTGAGTTACGGAAATCTGCTCTGGATAAGTTGGGAAATGTTGGTGAAGATTCCATACTTGGCCAGG
GGCTGAAAGTTCTTGATCACTCTGTCGAGAATTTCGCTACAGGAGCTTGGCAAGCATTAGGAAATGCATGGAAAGGTGGTTCTGGTTTCGTCCAGAGACT
AGAGAATTCTGCTGTGGACCTTGCAGACACAATTCAAAAGGATGGCATACAGGGTGCAGCTGGTTCGGTTGCACCATTACTAGAGTCTGGAAAAGCCTTC
ACAACAAAAGGAATGCAAGTACTTGAATATGTTGGCAAGGAGACCATGGATCTCCTAATTGCAGAGAGCGGTATGGATGTTGACAAGAATTCCAAATCCT
CCGGAAAAGAAGGTGACGAGGATCAGTCACTCGAGGATGTCACCTTCGATCGATGCTTCTATATATATGGAGGTCCAGAGCAATTGGAGGAGTTGGAGTC
ATTGGCAAACCATTACGCTCTCTTGTTCAATCGAAGGAAAGTGAAACTGTCTTCAGAACAGAAGTCTGTGTATGATGGAAAGCTCAAAACGGTTCAGCAA
ATTTTCGATCTCGACATTGGAATGGATGGAAATGGCACAGAGTCGAACAAAGGGAAAAACGTGGAGGCTGAAACCAAGGGAGGTAGCGATGAGATAAAAT
CCTTGCATGATTCTAGTGTCAGCAAAGCTGCTGATATGGCTGCAGGGTTTACAAGTGCGCTAGCTGGACAAAGCGTGAATGACATGGTTCAAAGAACTTC
TGGCAGACTAGAAACACTTCACTCAGAGGGGATCCATAGACTCTCCGAGATGGTCTGTGCTGCCGTCTCTCAGCTTCTGATGCTTGGTAAATCCATCATA
TCCCATGCTAACAAAACCACCCAAGAAGATGCTGATGATGATGATGATGCAGTCAACATCGTCTGGCCCGAAGATTCTGTTGAGAGAGCAAAGCTGATCA
GGAAACAGGCGCAAACAATGGCGCGATACACTGAAGCTGTTTCCAAAAGCTTCATAACAGGCATATCCGATGTTGCTGAAGCTTACCTAGCAGCCATAAA
GGGTGCCACTACTGCAGACAGCAGCAGCGAAGACCGTCCGAAGAAATCGATCCAAGAGAAAGCCAATACTTTCACCGAACTCCTGCGAATGGATCAAACC
GCTGCACTCGGGAAAATCCAGGACGGGCTCCAGTACTTGACTTATGTGGTCATTTCCACTTCCATGCCTGCTGCTTGA
AA sequence
>Lus10023852 pacid=23160732 polypeptide=Lus10023852 locus=Lus10023852.g ID=Lus10023852.BGIv1.0 annot-version=v1.0
MEDKSDDKTKNTPPTNEAMESRQKEEPDQEVKSSGAGGGGGGWGGWGGFSPFTVLSDLQKAAEEISRNAAEAAEKAAKRIADINLAEDSESSKGEDDREE
GASDKETDDESAELRKSALDKLGNVGEDSILGQGLKVLDHSVENFATGAWQALGNAWKGGSGFVQRLENSAVDLADTIQKDGIQGAAGSVAPLLESGKAF
TTKGMQVLEYVGKETMDLLIAESGMDVDKNSKSSGKEGDEDQSLEDVTFDRCFYIYGGPEQLEELESLANHYALLFNRRKVKLSSEQKSVYDGKLKTVQQ
IFDLDIGMDGNGTESNKGKNVEAETKGGSDEIKSLHDSSVSKAADMAAGFTSALAGQSVNDMVQRTSGRLETLHSEGIHRLSEMVCAAVSQLLMLGKSII
SHANKTTQEDADDDDDAVNIVWPEDSVERAKLIRKQAQTMARYTEAVSKSFITGISDVAEAYLAAIKGATTADSSSEDRPKKSIQEKANTFTELLRMDQT
AALGKIQDGLQYLTYVVISTSMPAA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15860 unknown protein Lus10023852
[exp]
0 1
AT2G15860 unknown protein Lus10021000
[exp]
1.4 0.8537
AT2G38020 EMB258, MAN, VC... VACUOLELESS 1, MANGLED, vacuol... Lus10012203
[exp]
3.0 0.8190
AT5G46860 SGR3, ATVAM3, A... SHOOT GRAVITROPISM 3, ARABIDOP... Lus10040094
[exp]
8.5 0.7676
AT1G24120 ARL1 ARG1-like 1 (.1) Lus10029202
[exp]
11.0 0.7961
AT3G45600 TET3 tetraspanin3 (.1) Lus10023338
[exp]
11.3 0.7913
AT5G25050 Major facilitator superfamily ... Lus10003419
[exp]
15.9 0.7859
AT5G18830 SBP ATSPL7, SPL7 squamosa promoter binding prot... Lus10012782
[exp]
16.1 0.8373
AT5G58300 Leucine-rich repeat protein ki... Lus10019113
[exp]
18.5 0.7789
AT5G59020 Protein of unknown function (D... Lus10040721
[exp]
22.2 0.8030
AT5G15860 ICME, ATPCME Isoprenylcysteine methylestera... Lus10034399
[exp]
27.7 0.7605

Lus10023852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.