Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19020 44 / 4e-05 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 41 / 0.0004 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021001 [exp] 52 / 2e-07 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 46 / 9e-06 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 46 / 1e-05 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G108100 [exp] 46 / 1e-05 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 45 / 3e-05 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023853 pacid=23160698 polypeptide=Lus10023853 locus=Lus10023853.g ID=Lus10023853.BGIv1.0 annot-version=v1.0 ATGAGGCGCGCTCCACCACCATCACCCGTACCAACGCAATCGGCCCCTCCACCCACACCAATCCATTCTCCTCCGCCACCAGTGCCAGTCTATTCCCCAC CACCTCCATCACCGATTCATTCACCGCCTCCACCGACATTCTCCCCGCCACCACCAGTTTATTCTCCACCGCCACCACCACCAGTCCATTCCCCACCACC TCCTGCACCAGTTCACTCACCGCCTCCACCGACATTCTCCCCGCCGCCGACTGAGGAAGACCCCCATTTGCTAGCTAGTGGCGGAATGGGTCGCGCTCCA CCACCATCTCCCGTGCCGACACAATCTCCCCCTCCACCGGCGCCAGTCCATTCTCCTCCTCCACCGCCGCCAGCACCAATCCATTCACCACCACCTCCGG CACCGGTTCACTCACCGCCTCCACCGACATTCTCCCCACCACCACCGCCGATCCATTCTCCACCGCCGCCAGTTCTATCCCCACCACCTCCCACTCCGGT ACATATTCCACCACCACCAGTACATTCCCCTCCTCCGCCGGTAGCCCAACACCCACCGCCAAGGCCACCACCCGCTTCTTCAGCACCGCCGCCAAAACAA CACGACTTCGTCCTCCCGCCAAACTTAGGATTCCAATATCATTCCCCTCCGCCGCCGATGTTCCCAGGCTACTAA
AA sequence Show only first row Show all	>Lus10023853 pacid=23160698 polypeptide=Lus10023853 locus=Lus10023853.g ID=Lus10023853.BGIv1.0 annot-version=v1.0 MRRAPPPSPVPTQSAPPPTPIHSPPPPVPVYSPPPPSPIHSPPPPTFSPPPPVYSPPPPPPVHSPPPPAPVHSPPPPTFSPPPTEEDPHLLASGGMGRAP PPSPVPTQSPPPPAPVHSPPPPPPAPIHSPPPPAPVHSPPPPTFSPPPPPIHSPPPPVLSPPPPTPVHIPPPPVHSPPPPVAQHPPPRPPPASSAPPPKQ HDFVLPPNLGFQYHSPPPPMFPGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10023853 [exp]	0	1
					Lus10019378 [exp]	1.4	0.8353
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	3.2	0.8335
					Lus10039034 [exp]	9.3	0.7896
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	12.6	0.7612
					Lus10013260 [exp]	14.1	0.7612
AT3G55550			Concanavalin A-like lectin pro...		Lus10010867 [exp]	15.0	0.7087
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	15.5	0.7612
					Lus10005297 [exp]	16.7	0.7612
					Lus10035557 [exp]	17.9	0.7612
					Lus10006529 [exp]	19.0	0.7612

Compare expression of checked genes

Lus10023853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.