Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25970 197 / 9e-56 KH domain-containing protein (.1) AT4G10070 128 / 4e-31 KH domain-containing protein (.1) AT1G33680 120 / 2e-28 KH domain-containing protein (.1) AT5G04430 54 / 9e-08 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT1G14170 47 / 2e-05 RNA-binding KH domain-containing protein (.1.2.3) AT1G51580 44 / 0.0003 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020998 [exp] 583 / 0 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10004445 [exp] 174 / 1e-49 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10002947 [exp] 146 / 5e-37 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 135 / 2e-33 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10013531 [exp] 134 / 3e-33 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10017596 [exp] 48 / 1e-05 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 47 / 4e-05 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 46 / 9e-05 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10033557 [exp] 45 / 9e-05 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G055300 [exp] 198 / 1e-55 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 191 / 7e-53 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.013G099800 [exp] 142 / 1e-35 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.019G072500 [exp] 137 / 4e-34 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.010G230500 [exp] 50 / 2e-06 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.008G030700 [exp] 50 / 3e-06 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G114400 [exp] 44 / 0.0003 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 44 / 0.0003 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 43 / 0.0005 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 42 / 0.001 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10023854 pacid=23160795 polypeptide=Lus10023854 locus=Lus10023854.g ID=Lus10023854.BGIv1.0 annot-version=v1.0 ATGGAACCCCCCCGTCGGCAGCCGGACGAAGAGCGCAGCGGCGGCGGCGGAAAGAGGAAGCTGGAGAACACAATCGAGCTCGCCAAACAGAAGGCTCAAG AAATCGCCGCTCGGCTCATCAGCGACGCCGCCGCCGACCCCAAGCGCCAGCGCATGGGTGGCTCCGAAGCCTCCTCCGAGCCTTCTCCTTGGTCTGATTC CGCTCCCCCTGCAGCTCCTCCTTCTTACCCTGTTGCTTATAACACTCAATCGAGTCAGTATGGTGTGATGGGAAGTAAAAGGATTGCGATACCAAATGGC AAGGTTGGGGTTGTTATAGGGAAAGGAGGAGAGACGATAAAATACATTCAAATGACATCGGGGGCGAAAATACAAATCACCAAGGATCAGGAAGCTGATC CCCATGCTCTAACGAGGGATGTAGATTTGTCTGGCACTCCAGATCAAATGAGCAGAGCAGAAGAACTTATCAATGAAGTGATTTCAGAGGCAGAAGCAGG GGCTTATTCTTCTTCTGGAGGCCAAGGCTCAAATATGAAGCAATCTGGAGGCGAACAGTTCTCTATGAAAGTTCCAAATGACAGAGTGGGATTGCTCATT GGCAAGGGAGGTGAAACCATAAAGTATATGCAAAACACCTCTGGAGCCAGGGTGCAGATTATTCCCCTACACCTTCCTGCTGGTGATCCGACAACTGAGA GAACTGTATATATAAATGGTTCTGCCGAACAAATTGAGGCAGCCAAAGAATTGATTAATGAAGTAGTTAATGGGAAACGAATTATGAATTCATCCAGAAG CGACTCCTACCAACAACCAGCTTATCAGGCCCCTCCTCCTCCTTACTGGGCTTCAGGAGGACAACAACCTCCAATGCAACAACAAGCGTCATATGGCTAT CAGCAGCAACCTGGAGGTCATCCTACTCAACCTTCATACTACAGTAACTATGCGGCTCAACAACCAGCTTGGGACCAGTCAAACACATCAGGTCAACCAC AGCAACAAGCAGCTGGCTACGGTTACTATGGACAACAGCCTCAAATGGGAGCAGCAGGTGCAGTTAATCCCAACTATGGCTATCCGGCGGCACCTGGTGC CGGTACCAACACTTACAATCAGGGTTACGGCCAGCAGCCGCCTTCAAGTTATGGACAAGGTCAGGCTCCAACACACGAGCAGCAAAAACCGTACCCAGGT TCCGGTTATGGTCAAACTCAGCCAGAAGCGGCAGCATCCACACAGCCGACAACTCAAGAAGCGTCTGCTGCGTACAATCAGGCTGCTGCTTATAACAATC CTTACTGGAATTCATCTGGGTACCCTACCCAACCAGCTCAAACTGGTTATGATCAGACCGGTTATGGTTACGGACAGGGTGGGTATGCTGCTCAGCCGGG TTACGGACCGGGTGGATATGCTGGCGACTATGGACAGCAACCTCATCAGGAGACTCAACAGCCCCCAGCAAAGACAGAAACCAATGGCGATTCTGCATCA GCCGGTTATGAAGTCAAGACGAACAACGAGAATGCAGGTGATGGTTCGACCAATGGAGTGAAAGGGGAAGCAGCTCCTTCTGAATCTTGA
AA sequence Show only first row Show all	>Lus10023854 pacid=23160795 polypeptide=Lus10023854 locus=Lus10023854.g ID=Lus10023854.BGIv1.0 annot-version=v1.0 MEPPRRQPDEERSGGGGKRKLENTIELAKQKAQEIAARLISDAAADPKRQRMGGSEASSEPSPWSDSAPPAAPPSYPVAYNTQSSQYGVMGSKRIAIPNG KVGVVIGKGGETIKYIQMTSGAKIQITKDQEADPHALTRDVDLSGTPDQMSRAEELINEVISEAEAGAYSSSGGQGSNMKQSGGEQFSMKVPNDRVGLLI GKGGETIKYMQNTSGARVQIIPLHLPAGDPTTERTVYINGSAEQIEAAKELINEVVNGKRIMNSSRSDSYQQPAYQAPPPPYWASGGQQPPMQQQASYGY QQQPGGHPTQPSYYSNYAAQQPAWDQSNTSGQPQQQAAGYGYYGQQPQMGAAGAVNPNYGYPAAPGAGTNTYNQGYGQQPPSSYGQGQAPTHEQQKPYPG SGYGQTQPEAAASTQPTTQEASAAYNQAAAYNNPYWNSSGYPTQPAQTGYDQTGYGYGQGGYAAQPGYGPGGYAGDYGQQPHQETQQPPAKTETNGDSAS AGYEVKTNNENAGDGSTNGVKGEAAPSES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	0	1
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	1.4	0.9402
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Lus10011214 [exp]	2.6	0.9163
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	3.2	0.9381
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10023802 [exp]	3.2	0.9127
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Lus10009030 [exp]	3.5	0.9301
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10043379 [exp]	5.0	0.9004
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	7.1	0.9367
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10015579 [exp]	8.1	0.9192
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	8.2	0.9055
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	8.7	0.9234

Compare expression of checked genes

Lus10023854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.